Thermoflexus hugenholtzii: KNN16_07165
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Entry
KNN16_07165 CDS
T07254
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thug
Thermoflexus hugenholtzii
Pathway
thug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNN16_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thug03019
]
KNN16_07165
03016 Transfer RNA biogenesis [BR:
thug03016
]
KNN16_07165
Enzymes [BR:
thug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KNN16_07165
Messenger RNA biogenesis [BR:
thug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KNN16_07165
Transfer RNA biogenesis [BR:
thug03016
]
Prokaryotic type
tRNA degradation factors
KNN16_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
DUF4226
CNOT1_1st
OB_RRP5_4th
EXOSC1
PCB_OB
KH_PNO1_2nd
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
QWK12066
LinkDB
All DBs
Position
complement(1557425..1559650)
Genome browser
AA seq
741 aa
AA seq
DB search
MRREKHVFKTMVGDKEIVIETGYFAWQANGAVIVRVGDTMILATATMAKEPREGIDFFPL
SVDFEERLYAAGRIPGSFQRREGKPSENAILTARLVDRPLRPLFPKDLRNDVQIILTSLS
ADPEYHLDIPSIIAASAALTISDIPWFGPVGAVRVGYIDGQFVINPTVSQMEHSRLDLRL
AGTADAVIMVEAGANEIPEDLMVEAIRLGHEAMQPLIALQEEMRASIGKPKATYRAFSIS
EEVRQAVRARLDHQIAEILDTYFDKDKRNEALDELEEEILQALSEYEQAQVKESFHEALR
EEVRRRILEEGRRPDGRGPKDIRPIWCEVDVAPRAHGSAIFTRGDTQVLSVATLATLAEQ
QELDTLAPEETKRYIHHYNFPPFSTGEVRVLRGASRREIGHGALAERALLPVIPPEDEFP
YTIRVVSEVLSSNGSTSMASVCGSTLALMDAGVPIRKPVSGVAMGLVTADETWRKYVILT
DIQGMEDHLGDMDFKVAGTADGITALQMDVKIRGLPYHVLAEALHQAREARLYILEKMLE
VLPAPRPELKPHAPRIFTVHIPVEKIGALIGPGGKTIRKIQEETHTQIDIEEDGTVHIAA
TSLADAESARLKIEAYAEEPQVGKIYLGKVIRITDFGAFVEILPGEVGMVHISQIADQKV
NRIEDVVRVGDQILVMVTHIDEDGKIRLSRQAVLEGLSVEEAQQRDRLLAAKAAPKGKGK
PGEERPLAGRVKIVKRASGER
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgagagaagcatgttttcaaaacgatggtcggcgacaaggagatcgtcatcgag
accggctacttcgcctggcaggccaacggcgcagtgatcgtccgcgtcggcgacacgatg
atcctggccaccgccaccatggcgaaggagccgcgggagggcatcgatttcttccccctg
agcgtggatttcgaggaacggctctacgcggcgggtcgcatccccggcagcttccagcgt
cgggagggcaagccctcggagaacgccatcctcaccgcccgcctggtggatcgccccctc
cgacccctgttccccaaagacctgcgcaatgacgtccagatcatcctgaccagcctctcc
gcggatccggaatatcacctggatattccttcgatcatcgcggcctcggcggccctgacc
atctcggacatcccctggttcgggccggtgggggcggtgcgcgtgggctacatcgacggg
cagttcgtgatcaaccccacggtcagccagatggagcacagccggctggacctgcggctc
gcgggcacagcggacgcggtgatcatggtcgaggcgggggccaacgagatccccgaggac
ctgatggtggaggcgatccgcctgggccacgaggccatgcagccgctgatcgccctccag
gaggagatgcgggcctccatcggcaagcccaaggccacctacagggccttctccatctcc
gaggaggtgcgccaggctgtccgcgcccgcctggatcaccagatcgcggagatcctggac
acgtatttcgacaaggacaagcggaacgaggcgctggacgagctggaggaggagatcctc
caggccctctccgagtatgagcaggcccaggtgaaggagagcttccacgaggcgctgcgg
gaggaggtgcgccgccgcatcctggaggagggccgccggccggacgggcgcgggccgaag
gacatccggcccatctggtgcgaggtagacgtggcgccccgtgcccacggctcggccatc
ttcacccggggcgacacccaggtcctctcggtggccaccctggccaccctggccgagcag
caggagctggacacgctggcccctgaggagaccaagcgctatatccaccattacaacttc
ccgcccttctccaccggtgaggtgcgagtgctgcgcggggcctcccggcgggagatcggg
cacggggccctggcggagcgggcgctgctgccggtgatcccgccggaggacgagttccct
tacaccattcgggtggtgagcgaggtgctctcctccaacggctccacctccatggccagc
gtctgcggctccaccctcgccctgatggacgccggggtcccgatccgcaagccggtctcc
ggtgtggccatgggcctggtgaccgccgatgaaacctggcggaaatacgtgatcctcacc
gacatccaggggatggaggatcacctgggggacatggacttcaaggtggccggcacggcg
gatgggatcaccgccctgcagatggatgtcaagatcagggggctgccctatcacgtgctg
gccgaggcccttcatcaggcccgcgaggctcgcctttacatcctggagaagatgctggag
gtcctgcccgccccgcggccggagctcaagccgcacgccccgcgcatcttcaccgtccat
attccggtggagaagatcggcgccctcatcgggccgggcgggaagaccatccgcaagatc
caggaggagacccatacccagatcgacatcgaggaggacgggacggtccacatcgccgcc
accagcctggccgacgccgagagcgcccgcctcaagatcgaggcctacgccgaggaaccc
caggtgggcaagatctacctggggaaggtcatccgcatcaccgacttcggggccttcgtg
gagatcctccccggcgaggtggggatggtccacatctcccagatcgccgaccagaaggtc
aaccgcatcgaggacgtggtgcgcgtgggcgaccagatcctggtgatggtcacccacatc
gacgaggacggcaagatccgcctctcccgccaggcggtgctggaggggctctcggtggag
gaggcccagcaacgggatcggctgctggccgcgaaggccgcgcccaaagggaaggggaag
cccggcgaggagcgtcccctggccggccgtgtgaagatcgtcaagcgggcttccggcgag
cgctga
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