Thermoflexus hugenholtzii: KNN16_10850
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Entry
KNN16_10850 CDS
T07254
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thug
Thermoflexus hugenholtzii
Pathway
thug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KNN16_10850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thug03400
]
KNN16_10850 (mfd)
Enzymes [BR:
thug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KNN16_10850 (mfd)
DNA repair and recombination proteins [BR:
thug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KNN16_10850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_16
RecG_dom3_C
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QWK09864
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All DBs
Position
2385598..2389068
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AA seq
1156 aa
AA seq
DB search
MALLSGLLSLLEDEPALQEARRALAAGHSAGISLPRAAWPFWIAALLQEAPRPTLIVAGT
AERAQRMAQDLALYLGPERTHLLPEPPVLPYERAPWPPEIRAERLTALAALAGLNGDPAP
VGVASARALRLRTLPPRLFHRLRRIIRTGQELPLEGFVRYLLEAGYEPVTMVTHPGQFAR
RGGILDLFPSTAPEPVRIEWEADRILSMRAFDPSTQRTLRPVEQVRIFPAREALPGYGPA
AAARLATWEPAAEAATEREALERERQALAQGAPFPTLEFYLPYFYGDATTPLAYLPEDGW
VILLDETEIREAWEEVDEEARALRARGESAGFLPPDYPDPLVDRVQWESALRRRPALRIT
ALPEEGGSPALPFEAPPRFGGQIQRMIEDFARRLQLREAVVIVSRQAGRLAAVWADHAPG
LREATQAVSSLETPPLPQRIYFLSGALSSGFLFRSKDSRRLALLTDAELFGVLRPLPWRR
RARRGPPPEWIRELREGDYVVHEDFGIGIFEGLVRLNLDGVEREYLVVRYAGNDRLYVPV
DQADRVSRYVGPTDQPPEIHPLGGGEWAQARARARQAAAEVARELLELYARREVARGHAF
SPDTPWQRELEASFPFVETEDQLRAIEEVKADMERPRPMDRLLCGDAGFGKTEVALRAAF
KAVMDGKQVALLAPTTILAHQHYETFRARLAPFPVVVEVLTRLRSPREQAEILRRLREGE
IDIVIGTHRLLQPDVVFRDLGLVIIDEEQRFGVMHKEHFKRLRAEVDVLTLTATPIPRTL
YLALSGLRDISLIQTPPEERLPVQVYVGPYDDRLVRSAIMRELDRGGQVFVVYNRVHGLE
AWKERLQALVPGARFGMAHGQMPPRQLEKTMMAFTRGEIDVLVATDIISSGLDIPNANTM
IVIRADLFGLAQLYQLRGRVGRSVLQGYAYFLYDPKVPLTAEARERLMAIYEIPGLGGGF
QLAMRDLEVRGAGEILGTRQHGHIAAVGFDLYMKMLNRAIVELRAEREGEPPPPAPEGVT
LNLPWPIGLPEDYIPDPALRLQLYRRMAAIQTLEGVAEMARELEDRFGPLPEEARNLLQQ
LRFKILAARAGIERIHVEGRTLVLRPAPAGADGIARELGGWIADGALRIPRRPTWPQDLE
RALRRWAGLPEAAGGR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttttaagcggtttgctctctctgctcgaagacgaaccggccctgcaggaggcc
cgccgcgcgctggcggcaggccattccgcggggatctccctcccccgggcggcgtggccc
ttctggatcgcggcgctgctacaggaagcgccgcggccgacgctgatcgtggccgggacg
gcggaacgcgcccagcggatggcccaggacctggccctctatctggggccggagcgcacc
catctgctacccgagccgccggtcctcccctatgagcgcgccccatggccccccgagatc
cgcgcggagcggctgacggccctggccgccctcgccgggctgaacggcgaccccgccccg
gtgggcgtggcctccgcccgcgccctgcggctccggacgctgccgccccgcctgttccac
cgcctgcgccggatcatccggaccggccaggagctgcccctggagggcttcgtccgctac
ctgctggaggccggctacgagccggtcaccatggtgactcaccccggccagttcgcccgg
cgcgggggcatcctggacctcttcccctcgaccgcgccggagccggtgcggatcgaatgg
gaggccgatcgcatcctcagcatgcgcgccttcgatccatccacccagcggaccctgcga
ccggtggagcaggtgcgcatcttcccggcccgggaggcgctgcccggctatgggcccgcg
gcggccgcccggctggcgacctgggagccggcggccgaggccgcgacggaacgggaagct
ctggagcgggagcgccaggccctggcccagggcgcgcccttcccgaccctcgagttctac
ctcccttacttctatggggatgcgaccacccctctcgcgtatctgcccgaggatggatgg
gtgatcctcctggacgagacggagatccgggaggcgtgggaggaggtggatgaggaagcc
cgggccttgcgggcccgcggggagagcgccgggttcctcccccccgattatccggacccc
ctggtggatcgcgtgcaatgggagagcgccctgcgccggcgccccgcccttcggatcacc
gccctgccggaggaaggaggatctccggcgttgcccttcgaggccccgccgcgtttcggc
gggcagatccagcgcatgatcgaggatttcgcccggcgcctgcagctccgggaggcggtg
gtgatcgtgagccggcaggcgggccgcctggcggcagtatgggccgaccacgccccgggc
ctgcgggaggccacccaggccgtctcctccctggaaacgcccccgctcccgcagcggatc
tactttctgagcggggcgctgagcagcggcttcctcttccgctccaaagacagccgccgc
ctcgccctgctcaccgacgcggagctcttcggggtgctccgtcccctcccctggcgccgc
cgcgcccgacggggcccgccccccgaatggatccgggagctgcgggagggcgactacgtg
gtccacgaggatttcgggatcgggatcttcgagggcctggtccgcctcaacctggatggg
gtggagcgggagtatctggtggtgcgctacgccggcaacgaccggctgtatgtgccggtg
gatcaggcggaccgggtcagccggtatgtggggccgacggatcagccgcccgagatccat
cccctggggggcggggagtgggcccaggcgcgggcgcgggcacggcaggcggcggccgag
gtggcccgggagctgctggagctttacgcccggcgggaggtggcccggggccacgccttc
tcgccggacacgccctggcaacgggagctggaggcctccttccccttcgtcgagacggag
gaccagctgcgggccatcgaggaggtcaaggcggacatggagcggccgcggcccatggat
cgcctgctctgcggggacgccggcttcgggaagacggaggtggccctgcgggcggccttc
aaggcggtgatggacggcaagcaggtggccctgctggcgccgaccaccatcctggctcac
cagcactatgagaccttccgcgcccgcctggcccccttcccggtggtggtggaggtcctc
acccggctgcgctccccccgggagcaggcagagatcctgcgccggctccgggagggggag
atcgacatcgtcatcggcacccatcgtctgctccagccggacgtggtgttcagggacctg
gggttggtgatcatcgacgaggagcagcgcttcggggtgatgcataaggagcatttcaag
cgcttgcgagcggaagtggacgtgctcacgctcacggccacgcccatcccccgcaccctc
tatctggccctgagcggcctgcgggacatcagcctgatccagacgccccccgaggagcga
ctgcccgtccaggtctacgtggggccttacgacgaccggctggtgcgctccgccatcatg
cgggagctggaccgcgggggacaggttttcgtggtttacaaccgggtgcacggcctggag
gcctggaaggagcggctccaggccctggtgccgggggcccgcttcggcatggctcacggc
cagatgccgccccggcagctggagaagacgatgatggccttcacccggggagagatcgac
gtgctggtggccacggacatcatcagcagcggcctggacatccccaacgccaacacgatg
atcgtgatccgggcggacctcttcggcctggcccagctctaccagctgcgggggcgggtg
ggccgcagcgtgctgcagggctacgcctacttcctgtatgatccgaaggtccccctcacc
gcggaggctcgggagcgcctgatggccatctacgagatccccgggctgggcggcgggttc
cagctggccatgcgggacctggaggtgcggggcgcaggggagatcctgggcacccgtcag
cacggccacatcgccgccgtcggcttcgatctctacatgaagatgctgaaccgggccatc
gtcgagctgcgggcggagcgggagggcgagccgccgccgccggccccggagggcgtgacc
ctcaacctcccctggcccatcggcctgccggaggattacatccctgaccccgccctgcgg
ctgcagctctaccgccgcatggcggcgatccagaccctggaaggcgtggcggagatggcc
cgggagctggaggatcggttcggcccgctcccggaggaggcccgcaacctgctccagcag
ctgcgcttcaagatcctggccgcccgggcggggatcgagcggatccacgtggaggggcga
accctggtcctgcggccggccccggccggggccgatgggatcgcgcgggagctgggcggc
tggatcgccgacggcgccctccgcatcccccgccgccccacctggccccaggatctggaa
cgggccctccgacgctgggccgggctgcccgaagctgccggaggccgttga
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