Thermococcus sp. 2319x1: ADU37_CDS04310
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Entry
ADU37_CDS04310 CDS
T04245
Name
(GenBank) RNA-binding protein, containing S1 domain
KO
K07573
exosome complex component CSL4
Organism
thv
Thermococcus sp. 2319x1
Pathway
thv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADU37_CDS04310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thv03019
]
ADU37_CDS04310
Messenger RNA biogenesis [BR:
thv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
ADU37_CDS04310
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
ADU37_CDS04310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
OB_RRP5_4th
Auto_anti-p27
RRP4_S1
HVO_2753_ZBP
Trm112p
Prok-RING_1
PCB_OB
DZR_2
DZR
Zn_ribbon_IS1595
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
ALV62130
UniProt:
A0A0U2Z5A3
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All DBs
Position
384124..384723
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AA seq
199 aa
AA seq
DB search
MDKKEKKRVKDGDIVLPGDYLGVIEEFLPGEGIIEENGELYAARAGRVRINPEKIEISVE
PLTDTPPLPQVGDVVIARVIEVKPQAAIVQLLKIEGRKGYREIATSKLAGIHISQVRDGY
VESMSNEFKIGDIVRARVLTNGKSPIQLTTKAADLGVVYALCSSCRTPLVRRGNVLICPK
CGRTETRKLSTYYRKLKLE
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaagaaaagaaaagggtaaaagatggagatatagttcttccgggggattat
cttggtgttattgaggagtttcttcccggtgagggtataatagaggagaatggggagctc
tatgccgcaagggctggaagagtaaggataaaccccgagaagattgaaatatccgtggag
ccattaaccgataccccacccctcccacaggtgggggatgttgtaatagcgagggttata
gaggtaaagccccaggcagctatagtccagttgcttaaaattgagggtagaaaggggtac
agggagatagcaacgtcaaaacttgctggaatacatatctctcaagttagggatggatac
gtggagtcaatgagcaacgagttcaaaattggggacattgttagggcgagggtattaacg
aatgggaagagccctatacagctcaccacaaaagccgctgatctgggagtcgtttatgct
ctctgttcttcatgcaggactcctttagtgaggaggggaaacgtgctcatatgtccaaaa
tgcgggagaacagagacaagaaagctttcaacctactataggaagctgaagctggagtaa
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