Thermococcus sp. 2319x1: ADU37_CDS14120
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Entry
ADU37_CDS14120 CDS
T04245
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
thv
Thermococcus sp. 2319x1
Pathway
thv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADU37_CDS14120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thv03019
]
ADU37_CDS14120
Messenger RNA biogenesis [BR:
thv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
ADU37_CDS14120
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
ADU37_CDS14120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
KH_1
RRP40_S1
ECR1_N
KH_2
KH_KhpA-B
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
ALV63111
UniProt:
A0A0U3HHL5
LinkDB
All DBs
Position
complement(1188108..1188863)
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AA seq
251 aa
AA seq
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MKKIFVKNRELVVPGTLLAQGPFKNGRGTFKDGNRIYSTVIGLVRISNDTVSVVPLEGPY
IPEVGDSVIGKIVDVKFSNWVVDIGAPYQATLRVQDAVEGKIDILKTDLRKIFDIGDIIY
AKVKAFNEINQIDLITKGMPFNGGPLKGGQLVKITPSKVPRLIGKGGSMINMIKSLTNTR
IIVGQNGWIWVSGRNEELEKLAIEAILKVDKESHIQGLTDRVREMLIKRLHELKEQGIIE
EVPQIEEGEKE
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagatttttgtaaaaaatagggaattggtggttccaggaacgcttttagcccag
ggaccgttcaaaaatggaagaggaacttttaaagatggaaacaggatttactcgacggta
attggattggtcaggatttcaaacgatacagtgtcagtagttcctttggaaggtccatac
attccagaagtgggggatagcgtaatagggaagatagttgacgtaaagttctcaaactgg
gtggtcgatataggcgctccctatcaagccacgctgagggttcaggatgctgttgaaggg
aaaatagacattttaaagacagatttgaggaaaatatttgatataggtgacataatctac
gcaaaagtaaaggcgtttaatgaaatcaatcaaatagacctaataacaaaaggaatgcct
ttcaatgggggacctctaaaggggggacagcttgtaaagataactccttctaaagtgcct
cgccttataggcaagggtggctcaatgataaacatgatcaagagccttacgaacacgagg
ataatagtagggcagaacggatggatatgggttagcggaagaaatgaggaactggaaaag
ctggctatagaggcaattctaaaagtagacaaagaaagccacattcagggattaactgac
agggttagggagatgctgattaagagattgcatgagcttaaagaacaggggattattgaa
gaagttcctcaaattgaagagggtgaaaaggaatga
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