Thioclava nitratireducens: BMG03_00760
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Entry
BMG03_00760 CDS
T04697
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
thw
Thioclava nitratireducens
Pathway
thw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMG03_00760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thw03019
]
BMG03_00760
03400 DNA repair and recombination proteins [BR:
thw03400
]
BMG03_00760
Enzymes [BR:
thw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMG03_00760
Messenger RNA biogenesis [BR:
thw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BMG03_00760
DNA repair and recombination proteins [BR:
thw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BMG03_00760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Rhodanese
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AQS46489
LinkDB
All DBs
Position
complement(154653..156716)
Genome browser
AA seq
687 aa
AA seq
DB search
MPAAAAAEAPAELLARVWGFDAFRPGQEEIVRAVIEGRNVLAIMPTGGGKSLCYQLPALA
REGVTVVISPLIALMRDQVRALKQAGVEAGALTSGNTEEETEEVFTAIDEGRLKLLYMAP
ERLASGGAQHLLKRAGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRSLGVPLAAFTATA
DEETRTEIVTRLFDGQPPESFLRGFDRPNIHLAFSPKDQPRQQILRFAAARKGQSGIVYC
GTRAKTEALAKALSEAGHLACHYHGGMEADDRRAVETRFQQEDGLIVVATVAFGMGVDKP
DIRWVAHADLPKSIEAYYQEIGRAGRDGAAAETLTLYGPDDIKLRRSQIDEGLAPPERKE
ADHGRLNALLGLAEATECRRVKLLRYFGEEAAPCGHCDLCDTPPEVFDGTEAVRKALSAA
LRSEERFGAGHLIEILLGSQTDKIKQWGHDKLPTYGVGRDLSRAQWQAVFRQMMGHDLIR
PDAARHGALVMTETAHPILRGEQSITLRRDLVAKAKTKHVVRTLVSDDDAPLLSALKAKR
RALAEAQGVPAYVVFTDRTLIEMAEKRPGTLDEMAGISGVGAKKLESYGAEFLEVIAGAV
EEMHPLRRKLAGSTEGEIYDRLADAQRNLERGADGYDRPLSCSASTIRKIAETKPRSRDD
LARISNLPEAKLDRFAEAFLAVLADYR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggctgcggcagccgaagcccccgcagagctactggcgcgggtctgggggttc
gacgccttccgacccggtcaggaagagatcgtgcgcgcggtgatcgagggccggaacgtg
ctggcgatcatgccgacgggcggcggaaaatccctgtgttatcaattgcctgcgctggcg
cgcgagggcgtgacggtggtgatctcgccgctgatcgcgctgatgcgcgatcaggtgcgc
gcgttgaaacaggccggcgtcgaggcgggcgcgctgacctcgggcaataccgaggaggag
accgaagaggtcttcaccgcgatcgacgaaggacggctgaagcttctctacatggcgccc
gaacgtctggcctctggcggggcgcagcacctgctgaagcgcgcaggcgtcagtctgatc
gcggtggacgaggcgcattgcgtcagccaatggggccatgatttccgccccgactacctg
cgcatcggcgagctgcgccgcagccttggcgtaccgcttgcggccttcaccgcgaccgcc
gacgaagaaacccggaccgagatcgtcacgcgcctgttcgacgggcagccccccgagagc
ttcctgcgcggcttcgaccgaccgaatatccatctggccttttcgcccaaggatcagcca
cgtcaacagattttgcgcttcgcggccgcgcgaaaagggcaatccggcatcgtttattgc
ggcacgcgggcgaaaaccgaggctttggccaaggcgctgagcgaggccgggcatctcgcc
tgtcactatcacggcgggatggaggccgatgaccgccgcgctgtggagacccgctttcag
caggaagacgggttgatcgtggtcgcgacggtcgccttcgggatgggcgtcgacaagccc
gatatccgctgggtcgcccatgccgatctgcccaagagcatcgaggcttactatcaggag
atcggtcgcgcgggtcgcgacggtgccgccgccgagacgctgacactgtatgggcccgac
gacatcaagctgcgccggtcccagatcgacgaagggctcgccccgcccgagcgcaaggag
gccgatcacgggcggctgaatgcgctgctgggtctggccgaggcgaccgaatgccgccgg
gtgaagctgctgcgctatttcggcgaagaggccgcgccctgcgggcattgcgacctatgc
gatacgccgcccgaggtgttcgacgggaccgaggccgtgcgcaaggcgctgtccgccgcg
ctgcgctcggaggaacggttcggcgcggggcatctgatcgagattctgctgggctcgcag
accgacaagataaagcaatggggccacgacaagctgccgacctatggggtcgggcgcgat
ctgagccgggcgcaatggcaggcggtattccggcagatgatggggcatgacctgatccgt
cccgacgccgcgcggcacggcgcgctggtgatgaccgagactgctcatccgatcctgcgc
ggcgagcagtcgatcacgctgcgccgcgatctggtggcgaaggcgaagaccaaacacgtg
gtccggacgctggtgagcgacgacgacgcgccgcttctctcggcactgaaggcgaagcgc
cgcgcgctggccgaggcgcagggggtgcccgcctatgtcgtcttcaccgaccgcaccctg
atcgagatggccgagaaacgccccggaacgctcgacgaaatggcggggatcagcggtgtc
ggtgccaagaagctggaaagctatggcgcggagtttctggaggtgatcgccggcgcggtg
gaagagatgcacccgctgcgccgcaagctcgcaggttcgaccgagggggaaatttacgac
cggttggccgatgcgcagcgaaatctcgaacgcggcgcggatggctatgatcgcccgctc
tcctgctcggcctcgacgatccgcaagatcgcagagacgaagccgcgctcgcgcgatgac
ctcgcccggatttccaacctgcccgaggcgaagctcgaccgctttgcagaggcgttcctg
gcggtcctggccgactaccgctag
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