Thioclava nitratireducens: BMG03_06605
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Entry
BMG03_06605 CDS
T04697
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
thw
Thioclava nitratireducens
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thw03019
]
BMG03_06605
Enzymes [BR:
thw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BMG03_06605
Messenger RNA biogenesis [BR:
thw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BMG03_06605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
HA2_N
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AQS47504
LinkDB
All DBs
Position
1324879..1327365
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AA seq
828 aa
AA seq
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MEKVVSLGNKGRVNTDRLSLPIDVVLPDLRAALSSHGRAVLMAPPGAGKTTRVPLALLDQ
IEGGIVMLEPRRLAARAAAERMAETLGEKVGETVGYRIRGEAKVSKSTRIEVVTEGILTR
VLQSDPELTGIGCVIFDEFHERSLNADLGLALTWEVRGALRPDLALVVMSATLDAEPVAA
LLDDAPIVVSEGRAFPVETRWLDRPVDSSMRFEAAMAGLITEAAEATDGSLLAFLPGEGE
IRRVEGLLKGRLADDIAIRPLFGAMEFAAQRAAIAPAPSGRKLVLATAIAETSLTIEDTR
VVIDGGRARRARFDPGSGMARLVTEPVSRAEAEQRRGRAGRVAEGICYRLWTKGAEGALP
AFAPPEIEVADLTGLALELAVWGTDGGDLAFLTPPPAPAMAEARALLEELGALKSGLITE
HGRKLAKLPLHPRLGHMLLTAGPEAAPLAALLAERDPLRGAPADLTLRLSAIRDPKRLEA
HHPYTPHRGTIERIRSEAKRLARLATAAPETYSSAEQLALAYPDRVGLRRKGDAPRYVLS
GGKGAVVAEGDPLGAQRLIVVSDLDGDPREAKVRQGIAISEAELRRLYADQIAWQDVCDW
SKREGRVIARKQERFGALVLDDRVWKDAPREAVAQGALAGLRQIGLPMSAAARRLQARVE
LLRGQGADLPDFSDEGLLASAENWLLPYLGKARTEADLRKLDLTDPLRAALDWEQMQLVD
RLAPAHFETPLGRRVPIDYAGEAPGIEIRLQEMFGVTTHPTVGPKRLPLRITLLSPGHKP
IQVTMDLPGFWEGSYADVRKDMRGRYPKHPWPEDPREADPTLRAKPRK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggtcgtctcactcggcaataaggggcgggtgaacacagaccgcctttccctt
cctatcgacgtggtgctgcccgatctgcgggcggcgctgtcatcgcatggccgcgcggtg
ctgatggcgccgccgggcgcgggcaagacgacccgcgtgcccctcgcgctcttggaccag
attgagggcggaatcgtcatgctggagccgcgccgcctggccgcgcgcgctgccgccgag
cggatggcggagactttgggcgaaaaggtcggcgagacggtcggctaccgcatccggggc
gaggcgaaggtctcgaaatccacgcggatagaggtcgttactgaaggcatcctgacgcgc
gtgctgcaatccgacccggaattgaccggcatcggttgcgtgatcttcgacgaattccat
gaacgctcgctgaacgcagacttggggctggcgctgacatgggaggtgcgcggcgcgctc
aggcccgatctggcgctggtggtgatgtcggccacgctcgatgcagagccggtggcggca
ttgctcgacgacgcgccgatcgtggtgtccgaggggcgggcctttccggtcgagacgcgc
tggttggatcgtccggtggacagttcgatgcggtttgaggccgcgatggccgggctgatc
accgaggccgcggaggccaccgacgggagccttctggccttcctgccgggcgagggcgag
attcgccgcgtcgaagggctgctgaagggccgcttggccgatgacatcgcgatccgcccg
ctgttcggcgcgatggaattcgccgcccaacgcgccgccatcgcgcccgcgccctcgggc
cggaaactggtgctcgccacagccatagcggaaacctctctgaccatcgaagacacccgc
gtcgtgatcgacggcggccgcgcacgccgggcgcggttcgacccgggctctggcatggcg
aggctggtcaccgaacccgtctcccgcgccgaggccgagcagcgccggggccgcgcgggc
cgcgtggccgagggcatctgctaccggctctggaccaagggcgcggaaggcgcgctgccc
gccttcgccccgcccgagatcgaggtcgccgacctgaccggacttgcgctggaactcgcg
gtctggggcaccgatggtggcgatctggctttcctgacgccgccgcctgcacctgcgatg
gccgaggcgcgcgctttgctggaagaactcggcgcgctgaaatcggggctgatcacggaa
cacgggcgcaagctcgccaaactgccgctgcacccgcgcctcgggcacatgctgctgacc
gcgggccccgaggcggcaccgcttgctgcccttctggccgaacgcgatccgctgcgtggc
gcgcccgctgacctgacgctgcgcctcagcgcaattcgcgacccgaagcgcttggaggcg
caccacccctatacgccccatcgcggcacaatcgagcgtatccgatccgaggcgaagcgg
ctggcccgcctcgccactgcagcgcccgagacctattcctccgccgagcaactcgcgctc
gcttaccctgaccgtgtggggcttcgccgcaagggggacgcgccgcgctacgtgctctcg
ggcggcaaaggggcggtggtggccgaaggcgatccgctgggcgcgcaacgcctcatcgtg
gtgagcgatctagacggcgatccgcgcgaggcgaaagtgcgccaaggcatcgcgatctcc
gaggccgagcttcgtcgcctctacgcggatcagatcgcatggcaggatgtctgcgactgg
tccaagcgagagggccgcgtgatcgcgcgcaagcaggagcggttcggcgcgctggtcctc
gacgatcgcgtgtggaaagacgccccgcgcgaggcggtagcgcaaggcgcgctggcagga
ttgcgccagatcggcctgccgatgagcgcggcggcgcgccggctgcaggcgcgggtggag
ctgctgcgcgggcagggggccgatctgcccgatttctccgatgaggggcttttggcctcc
gccgagaactggcttctgccctatctcggcaaggcgaggaccgaggccgacctgcgcaag
ctcgacctcaccgatccgctgcgcgcagcgctcgactgggagcagatgcagctggtggac
cgtcttgcccccgcgcatttcgaaactccgctcggccgtcgtgtgcccattgactacgct
ggcgaggcgccgggcatcgagatccgtctgcaggagatgttcggcgtcaccacccatccg
acggtcggcccgaaacgcctgccgctcaggatcacgctgctgtcacccggccacaaaccc
attcaggtcacgatggacctgcccgggttctgggagggctcttacgccgatgtgcgcaag
gatatgcgagggcgctaccccaagcacccgtggcccgaggacccgcgcgaggccgatccg
acgctgcgggcgaagccgcgcaagtga
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