Thioclava nitratireducens: BMG03_07160
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Entry
BMG03_07160 CDS
T04697
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thw
Thioclava nitratireducens
Pathway
thw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMG03_07160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thw03019
]
BMG03_07160
Enzymes [BR:
thw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BMG03_07160
Messenger RNA biogenesis [BR:
thw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BMG03_07160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Motif
Other DBs
NCBI-ProteinID:
AQS47600
UniProt:
A0ABM6IG29
LinkDB
All DBs
Position
1435808..1437187
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AA seq
459 aa
AA seq
DB search
MSDFSSLGLSPAILKSLARAKFTQPTPIQEKAIPLVLAGHDVLGLAQTGTGKTLAFGLPL
IDKLMAQPGKPSPKTCKALILAPTRELVNQIADNLSGLVQGTKMNVATVVGGQSINRQIT
MMHRGNDILVATPGRLIDLMDRGAVDLRYTRHLVLDEADQMLDLGFIHALRKIASRLGTP
RQTLLFSATMPKQMEEISQAYLTDPKRVQVSPPGKAADKITQSVHFLDSKAEKARKLRDI
LSADMGALTLVFARTKHGAEKLMKSLRADGYNAESIHGNKSQGQRDRAIKGFRDGKVNVL
VATDVAARGIDIPGVSYVVNFDLPDVPDAYVHRIGRTARAGREGEAIAFCSPDEADNFLQ
IEKLMKIEIPTASGERPSEAVRPSARAGRGRGRGGPRSGGNKGRGGKPQGKPQGQGQGQG
QAQAQPRSKPRAEAKPKVDAGGNATPKRRRPRRRNAGAA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatttctcttcgctggggctctccccggccattctcaagtcgctcgcacgcgca
aaattcacccagccgaccccgattcaggaaaaggcgattccgctggttcttgcgggccat
gacgtgctgggcctcgcccagaccggcaccggcaagacgctggcattcggcctgccgctc
atcgacaaactgatggcgcagccgggcaaaccttcgcccaagacctgcaaggcgctgatc
ctcgcgccgacccgcgaactggtgaaccagatcgccgacaacctctcggggctcgttcag
ggtaccaagatgaatgtcgccaccgtcgtcggcggccagtcgatcaaccgtcagatcacc
atgatgcatcgcggcaacgacattctcgtcgcgaccccgggccgtctgatcgaccttatg
gatcgcggcgcggtcgacctgcgctacacccgccatctggtgctcgacgaggccgaccag
atgctcgacctcggtttcatccacgcgctccgcaagatcgcatcgcgccttggcaccccg
cgccagacgctgctgttctcggccacgatgccgaagcagatggaggagatctcgcaggcc
tacctcaccgatccgaagcgtgtgcaggtctcgccccccggcaaggccgccgacaagatc
acccaatcggtgcacttcctcgacagcaaggccgagaaggcccgcaagctgcgcgatatt
ctctcggccgacatgggcgcgctgacgctcgtcttcgcccgcaccaagcatggcgctgaa
aagctgatgaagagcctccgcgcagacggctacaacgcggaatcgatccacggcaacaaa
tcgcaaggccagcgtgaccgcgcgatcaagggcttccgcgatggcaaggtcaacgtgctg
gtcgcgaccgatgtggccgcgcgcgggatcgacattccgggcgtgtcctatgtcgtgaac
ttcgacctgccggacgtgccggatgcctatgtccaccgtatcgggcgcaccgcgcgcgcc
ggtcgcgagggcgaggcgattgccttctgctcgccggacgaggcggataacttcctgcag
atcgaaaagctgatgaagatcgagatcccgaccgcgagcggcgaacgcccgtccgaggcc
gtgcgcccctccgcgcgcgcaggtcgtggccgcggtcgcggcggtccgcgctccggcggc
aacaagggtcgcggcggcaagccccagggcaaaccgcaggggcaggggcaaggccagggt
caagctcaggcccaaccgcgctcgaaaccgcgcgcggaagccaagcccaaggtcgacgcc
ggcggcaacgctacgccgaagcggcgtcgcccgcgtcggcgcaacgcaggcgccgcatga
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