Thioclava nitratireducens: BMG03_08655
Help
Entry
BMG03_08655 CDS
T04697
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thw
Thioclava nitratireducens
Pathway
thw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMG03_08655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thw03019
]
BMG03_08655
03009 Ribosome biogenesis [BR:
thw03009
]
BMG03_08655
Enzymes [BR:
thw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BMG03_08655
Messenger RNA biogenesis [BR:
thw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMG03_08655
Ribosome biogenesis [BR:
thw03009
]
Prokaryotic type
rRNA processing factors
BMG03_08655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AQS49793
LinkDB
All DBs
Position
1794470..1797388
Genome browser
AA seq
972 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETINKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADREALLEEERQLAEAAAEEEEKPKSRRRRSRRSSNK
AEKAKQDDAVVSSDEIPGMGVVDPEAEDENADAASEEAEADAQTETSEAPAEEAPASEAA
EKTAAVEAAQSDEDDSDDTEEDDDDAAEADSGIESVADEDVEEEIRPARKPRPRRYKIQE
VIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKL
KEIAGELDVPKGAGLIVRTAGAQRTKTEIKRDYEYLMRLWEQIRDLTMKSVAPAPIYEEG
DLIKRSIRDLYNKDIDEVLVEGERGYRAAKAFMKMIMPSHAKNVKHYAESLPLFARHQVE
SYLASMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAADEVAR
QLRLRDLAGLIVIDFIDMDERKNNSAVEKRMKERLKTDRARIQVGRISGFGLLEMSRQRL
RPGMIESTTQPCAHCHGTGLIRSDDSLALSVLRAIEEEGTRKRTREVLVRAPVAVANYLM
NAKREHVAVIEARYGMSVRIEAAPELVSPDFTIEKFKTATRNVAEVDSPVVSASASLMAE
IDEAEDETEAEAEAQTPEVETEAEEQPKKKRRRRRRRKKSNGENGENNDSSENGDQSSGD
HKSDDQKSEPTGGQDAPAKAEPAQAAEAPADEAKTEAQTDVKTEAQPEEEAPKPKRRSRA
RKKVEEPKADAETAEAAVEGTETKAEEEAPKPKRRTRSRKKVDPEADAQAAVEGSAAGAK
VEAAAAEEEAPKPKRRSRARKKVEEPVAETPESPEPPETPQPDAPTEPQETPQPDAPVET
PEPTPQETPADVPQETPPAPEPETPFEQPPETPQPDAPVELPGGPAFAETEAEGETMTEE
APKPKKRGWWSR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttatcgatgccacccacgcggaagagacccgcgtcgtggtggtg
gacggcaacaaggtcgaggaattcgactttgagaccatcaacaaacggcagctcgccggc
aatatctatctcgcgaaagtaacgcgcgtcgaaccgtcgctgcaggcggcattcgtcgac
tacggcggaaaccggcacgggttcctcgccttcgcggaaatccaccccgattactaccag
atccctgtcgccgaccgcgaagcgctcctcgaagaagagcgacagcttgccgaggccgct
gccgaggaagaggaaaagccgaaatcacgccgccgccgctcgcgccggtcctcgaacaag
gcggaaaaggccaagcaggacgacgcggtcgtcagctcggacgagatcccgggcatgggc
gtcgtcgatcccgaggcggaagacgagaacgccgatgccgccagcgaagaggcggaagcg
gacgcgcagacggaaacctccgaagctccggccgaggaagcgcccgcttcggaagctgct
gagaaaaccgcggctgtggaagctgcgcaatccgacgaggatgacagcgacgacacggag
gaggatgacgacgacgcggccgaggccgatagcggcatcgaatccgtcgccgacgaggat
gtcgaggaagagatccgtccggcccgcaagccgcgtccgcgccgctacaagatccaggaa
gtgatcaaggtgcgccagatcatgctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggcgccgctctgaccacctatctctcgctggcaggccgctactgcgtgctcatgcccaac
accgcgcgcggtggtggcatctcgcgcaagatcaccaacgccgccgaccgcaagaagctc
aaggaaatcgcgggcgagctggacgtgccgaaaggtgccggcctgatcgtgcgtacggcg
ggcgcgcagcgcaccaagaccgagatcaagcgcgattacgaatacctgatgcgcctgtgg
gagcagatccgcgatctgacgatgaaatccgtcgccccggcgccgatctacgaagaaggc
gatctgatcaagcgctcgatccgtgatctctacaacaaggatatcgacgaggttcttgtc
gagggcgagcgcggctaccgcgcggcgaaggcgttcatgaagatgatcatgccgagccac
gccaagaacgtgaagcactacgccgagtcgctgccgctcttcgcgcgccatcaggtggaa
agctacctcgcctcgatgttcaacccgacggttcagctgaagtcgggcggctatatcgtg
atcggcgtgaccgaagcgctcgtcgcgatcgacgtgaactcgggccgggccaccaaggaa
ggctcgatcgaggaaaccgcgctcaagaccaaccttgaagccgccgacgaagtggcccgc
cagctgcgcctgcgcgacctcgccgggctgatcgtgatcgacttcatcgacatggacgag
cgcaagaacaactcggccgtcgaaaagcgcatgaaagagcgcctcaagaccgaccgcgcg
cgcattcaggtcggacgcatctccggcttcggcctgctcgagatgagccgccagcgcctg
cgtccgggcatgatcgaatccacgacgcagccctgcgcccattgccacggcaccggcctg
atccgctccgatgacagcctcgcgctgagcgttctgcgcgcgatcgaggaagaggggacc
cgcaaacggacccgcgaggttctggtgcgtgcgcccgtcgcggtcgccaactacctgatg
aacgccaagcgcgaacatgtggcagtgatcgaggcccgctacggtatgtccgtgcgcatc
gaggccgcgcccgagctagtctcgcccgatttcaccatcgagaagttcaagaccgcgacc
cgcaatgttgcggaagtggacagccccgtggtgtcggcgtcggcaagcctgatggccgaa
atcgacgaggcggaggacgagaccgaggccgaagccgaggcgcagaccccggaggtcgag
accgaggccgaggagcagcctaagaagaagcgccgccgccgtcgccgtcgcaagaagtcg
aatggcgagaacggggagaataacgactcttcggagaacggcgatcagtcgtcgggcgac
cacaagtcggacgatcagaagtctgaaccgaccggaggtcaggacgcgcccgccaaggcc
gaacccgcgcaagcggcagaggctccggcggacgaggccaagaccgaggcgcagaccgac
gtcaagaccgaggctcagccggaggaagaagcgccgaagccgaagcgccgctcgcgcgcc
cgcaagaaggtcgaagaaccgaaagcggacgccgagactgcggaagctgcggttgagggc
accgagaccaaggccgaggaagaagcacccaagccgaagcgccgcacgcggtcgcgcaag
aaggtggatcccgaggcggatgcgcaagccgccgtcgaaggcagcgccgccggcgccaag
gtcgaggccgcagcggcggaggaagaggcgcccaaacccaagcgccgctcccgtgcgcgc
aagaaggtcgaggagcccgtagcggagacgcccgagagccctgagccgcccgaaaccccg
cagcccgacgcgccgaccgagccgcaggagacgccgcagcccgacgcgcccgtcgagacg
cccgagcctacgccgcaggaaacccctgccgacgtgccgcaggaaacgccgcccgcgccc
gagccggaaaccccgttcgagcagcctccggaaacgccgcagcctgatgctccggtcgaa
ctgcccggtggtccggccttcgcggaaaccgaagccgagggcgaaaccatgaccgaggag
gcgcccaagcccaagaaacggggctggtggagccgctga
DBGET
integrated database retrieval system
