KEGG   Thioclava nitratireducens: BMG03_10980
Entry
BMG03_10980       CDS       T04697                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
thw  Thioclava nitratireducens
Pathway
thw02024  Quorum sensing
thw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BMG03_10980
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BMG03_10980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thw03019]
    BMG03_10980
   03036 Chromosome and associated proteins [BR:thw03036]
    BMG03_10980
Messenger RNA biogenesis [BR:thw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BMG03_10980
Chromosome and associated proteins [BR:thw03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BMG03_10980
SSDB
Motif
Pfam: Hfq Hfq_1 LSM AcMNPV_AC11
Other DBs
NCBI-ProteinID: AQS49842
UniProt: A0ABM6IM02
LinkDB
Position
complement(2295193..2295426)
AA seq 77 aa
MAGDKQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPGQPISLYEGDD
NT seq 234 nt   +upstreamnt  +downstreamnt
atggctggcgacaaacagaacctgcaagacgcatttctcaatcatgtgcgcaagacaaag
gttcctgtcacgatcttcctgatcaacggggtgaagctgcagggcgtcatcacctggttt
gacaacttctgtgtgcttctgcgccgcgacgggcaatctcagcttgtttacaagcacgcg
atctcgacgatcatgccgggacaacctatctcgctttacgaaggcgacgactaa

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