Thioclava nitratireducens: BMG03_17995
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Entry
BMG03_17995 CDS
T04697
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thw
Thioclava nitratireducens
Pathway
thw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BMG03_17995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thw03021
]
BMG03_17995
03400 DNA repair and recombination proteins [BR:
thw03400
]
BMG03_17995
Enzymes [BR:
thw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BMG03_17995
Transcription machinery [BR:
thw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BMG03_17995
DNA repair and recombination proteins [BR:
thw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BMG03_17995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl
RnfC_N
PTS_EIIA_1
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AQS49472
LinkDB
All DBs
Position
complement(3718234..3722460)
Genome browser
AA seq
1408 aa
AA seq
DB search
MNQELTQNPFNPLAQPKAFDEIKISLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENFVVIEPGLTDLQYGQLMSEEEYLDAQDTYGADAFT
ANIGAEAIREMLAGIDLEATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTMEREGMKGEGMSFSSVEEVEHAL
NSGEVHLHAKITARIKQIDETGNEVYQRFETTPGRVRLGALLPLNAKAPFELVNRLLRKK
DVQNTIDTVYRYCGQKESVIFCDQIMGMGFKEAFKAGISFGKDDMVIPDNKWDIVETVRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMNTISAPKYDENGAEQEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRTHDCGTDRAITASAAVNDGEVVAPISERVLGRV
AADDVTVPGEDEVIVRAGELIDERKADAIEQAGVQSVRIRSALTCEAEEGVCALCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHLGGVAQGGSQSFLEASQEGKIEFRNAN
IILNEMDEQIVMGRNMQIVIVNDQGDELASHKIGYGTKVFVKDGETVKRGDKLIEWDPYT
LPIIAEKPGKVRFVDLISGISVREDTDDATGMTQKIVSDWRAAPKGNDLKPEVLILGEDG
EPVRNEAGNPVTYTMSVDAILSVEDGQDVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIDPRDEGLEPAEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALADYLINEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ILDSGDTTLLKGEHVDKVEFDEENDKVAARGGRPAHGEPVLLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATTKVRKIATERDSKVIQQRQA
EAEAAAALAAPTEEEADFGPVETPESRD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacccaaaacccgttcaacccgctcgcgcagccgaaggcgtttgac
gagatcaagatctcgctcgcctcgccggagcggatcctgagctggtccttcggtgaaatc
aaaaagccggaaaccatcaactaccgtacgttcaagcccgagcgtgacggtctgttctgc
gcgcgcatctttggcccgatcaaagactacgaatgcctgtgcggcaaatataagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtcgaagtcaccctccagaaagtgcgc
cgcgagcgtatgggccacatcgaactggcctcgcccgtcgctcacatctggttcctcaaa
tcgctgccttcgcgcatcggcctgatgttggacatgacgctgcgcgacctcgagcgtatc
ctctacttcgaaaacttcgtggtgatcgagccgggtctgaccgacctgcaatacggtcag
ctgatgtccgaagaagagtatctcgacgcgcaggacacctacggcgcggatgctttcacc
gccaatatcggcgcggaagcgatccgtgaaatgcttgctggcatcgatctcgaagccacg
gccgagcagctccgcgaggagctgaaggaagccaccggcgagctgaagccgaagaagatc
atcaagcgtctgaagatcgtcgagtcgttcctcgagtcgggcaaccgtcccgagtggatg
gtgctgaccgtgcttccggtgatcccgccggaactgcgtccgctcgtcccgctcgatggt
ggccggttcgcgacttcggatctcaacgatctctatcgtcgtgtgatcaaccggaacaac
cgtctcaagcgtctgatcgaactgcgtgcgcccgacatcatcgtgcgcaacgaaaagcgg
atgctgcaggaatcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacg
ggcaccaacaagcgcccgctgaagtcgctctcggacatgctgaaaggtaagcagggtcgc
ttccgtcagaaccttctgggtaagcgcgtcgacttctcgggtcgttcggtcatcgtgacc
ggcccggaactcaagctgcaccagtgcggtctgccgaagaagatggcgctcgaactcttc
aagcccttcatctactcgcgccttgaggccaaaggcctgtcgagcaccgtgaagcaggca
aagaagctggtcgagaaagagcgtcccgaagtgtgggatatcctcgacgaggtcatccgc
gagcacccggttctgctgaaccgtgcgccgacgctgcaccgtctgggtatccaggcgttc
gaaccgatgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgttcggcgttc
aacgctgacttcgacggtgaccagatggccgtccacgtcccgctctcgctggaagcccag
ctggaagcgcgcgtgctgatgatgtcgacgaacaacgttctgtcgcccgccaacggcgcg
ccgatcatcgttccttcgcaggatatgattctgggtctctactacgtgaccatggaacgc
gaaggcatgaagggcgaaggcatgtccttctcctcggtcgaggaagtggagcacgcgctc
aactctggcgaagtgcatctgcacgccaagatcaccgcgcggatcaagcagatcgacgaa
acaggtaacgaggtctaccagcgtttcgagaccacgcccggccgggtgcgcctcggcgcg
ctgctgccgctgaacgcgaaagctccgttcgagctggtgaaccgtcttctgcgtaagaaa
gacgtgcagaacacgatcgacaccgtctaccgctattgcggtcagaaagagtcggtcatc
ttctgcgaccagatcatgggcatgggcttcaaggaagcgttcaaggcgggcatctcgttc
ggcaaggacgacatggtgatcccggacaacaagtgggacatcgtcgaaaccgtccgcgac
caggtcaaggacttcgaacagcaatacatggacggtctgatcacccagggtgagaagtac
aacaaggtcgtcgatgcgtggtcgaagtgtaacgacaaggtcaccgacgcgatgatgaac
accatctcggcgccgaaatacgacgagaacggtgccgagcaggaaccgaactcggtctac
atgatggcccactcgggtgcgcgtggctcggtgacgcagatgaagcagctgggcggcatg
cgtggcctcatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgactcacggcgcccgtaagggtctg
tcggataccgcactgaagacggcgaactcggggtacctgacccgtcgtctggtggacgtc
gctcaggactgcatcgtgcgtacgcatgattgcggcaccgaccgcgcgatcaccgcgtcg
gcggctgtgaacgacggcgaagtcgtcgctccgatctcggagcgcgtgctgggccgtgtc
gcagcggatgatgtgacagttccgggcgaggacgaagtgatcgtccgcgccggcgagctg
atcgacgagcgcaaggccgacgcgatcgagcaggcgggcgtccaatccgtccgtatccgc
tcggcgctgacctgtgaggccgaagagggcgtttgcgcgctctgctacggtcgcgacctc
gcacgcggtacgctggtgaaccaaggcgaagcggtgggcatcatcgccgcgcagtccatc
ggtgaacccggtacgcagctgacgatgcggaccttccacctgggcggtgttgctcagggt
ggctcgcagtcgttcctcgaggccagccaggaaggcaagatcgagttccgtaacgccaac
atcatcctcaacgagatggacgagcagatcgtcatgggccggaacatgcagatcgtgatc
gtgaacgatcagggtgacgagcttgcctcgcacaagatcggctacggcaccaaggtcttc
gtgaaggatggcgaaacggtcaagcgcggcgacaagctgatcgaatgggatccctacacc
ctgccgatcatcgccgagaagcccggtaaggtgcgcttcgtggacctcatctcgggtatc
tccgttcgcgaggataccgacgatgcgaccggcatgacccagaagatcgtgtccgactgg
cgcgctgcgcccaagggcaacgatctgaagccggaagttctgatcctcggcgaggatggc
gaaccggtccgcaacgaagcgggcaacccggtgacctataccatgtcggtggacgcgatc
ctctcggtggaagacggtcaggacgtgaaggcgggcgacgtcgttgcgcgtattccgcgc
gaaggcgccaagacgaaggacatcaccggtggtctgccgcgtgtggccgaactcttcgag
gcacgccgtcctaaggatcacgcgatcatcgccgaaatcgatggctatgtgcgcttcggc
aaggactacaagaacaagcgtcggatcgcgatcgatccgcgtgacgagggtctggagccg
gcagagtacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactacatcatggatggcaacccggcgccgcacgacatcctgcgcatcatgggg
atcgaggctctggccgactacctcatcaacgaggtgcaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
atcctcgactccggcgatacgacgctcctcaagggcgaacatgtcgacaaggtcgagttc
gacgaggagaacgacaaggtcgcggcccgtggtgggcgtccggcgcatggcgaacccgtg
ctgctcggcatcaccaaggcgtcgctgcagacccggtcgttcatctcggcggcctccttc
caggagacgacccgcgtcctcaccgaagcctcggtgcagggcaaacgcgacaagctcgtg
ggcctcaaggagaacgtcatcgtcggccgtctgatcccggcgggtaccggtggcgcgacc
accaaggtccgcaagatcgcgaccgagcgcgactccaaggtcatccagcagcgtcaggcc
gaggcggaagccgcggcagcgctggcggctccgaccgaggaagaagccgatttcggtccg
gtcgagacgcccgaaagccgcgattga
DBGET
integrated database retrieval system
