Thioclava nitratireducens: BMG03_18885
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Entry
BMG03_18885 CDS
T04697
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
thw
Thioclava nitratireducens
Pathway
thw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BMG03_18885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thw03400
]
BMG03_18885
Enzymes [BR:
thw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BMG03_18885
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BMG03_18885
DNA repair and recombination proteins [BR:
thw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BMG03_18885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
DUF7573
Zn_ribbon_6
Acetyltransf_6
Motif
Other DBs
NCBI-ProteinID:
AQS49630
LinkDB
All DBs
Position
3908369..3909214
Genome browser
AA seq
281 aa
AA seq
DB search
MPELPEVETVRRGLVPAMEGHRIERAEVNRPDLRWPLPERMAERLQGARVDRLRRRSKYI
LADLDSGESLLIHLGMSGRMLVSGVALGEFHLEHPAPAKHDHVVLHMAGGGRVTFNDARR
FGAMDLVLTEREQAHWLLAGLGPEPFGNDFHEDYLVEALKRRATPIKSALLDQHVVAGLG
NIYVCEVLHRAGIDPRRQAKRISNARIASLVPIIREVLTEAISAGGSSLRDHRQADGELG
YFQHSFHVYDREDAPCSTCGTPIRRIVQSGRSTFFCPACQK
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaggtcgagacggttcgtcgcgggttggtcccggccatggaaggc
catcggatcgagcgtgccgaagtcaatcggcccgacctgcgctggcccctgcccgagcgg
atggccgagcggttgcagggggcccgcgtggaccgtctgcggcgacggtcgaaatacatc
ctcgcggatctcgacagcggagaaagcctgctgatccacctcgggatgtcgggccgcatg
ctggtctcgggcgtggcgcttggcgagtttcacctcgaacatcccgcgcctgcgaaacac
gatcacgttgttttgcacatggcgggtggcggacgtgtgaccttcaatgacgcgcgtcgc
ttcggggcgatggatctggtgctgaccgagcgcgagcaggcgcattggcttttggcgggc
ctgggccccgagcccttcggcaacgacttccacgaagactatctggtcgaggcgctcaaa
cggcgcgcgaccccgatcaagtctgcgctgctcgaccagcatgtcgtggcgggtctgggc
aacatctatgtctgcgaggtgctgcaccgggcaggtatcgacccgcgccgtcaggcgaag
cggatttcgaacgcacgcatcgcctcgctggtgccgatcatccgcgaggtgctgaccgag
gcgatctcggcgggagggtcgtctctgcgcgaccatcggcaagcggatggggaactggga
tatttccagcacagcttccatgtctacgaccgcgaggacgcgccctgtagcacttgcggg
acgccgatccggcgcatcgttcaatccggacgatccacctttttctgcccggcctgccag
aaatga
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