Thermoanaerobacter sp. X513: Thet_2056
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Entry
Thet_2056 CDS
T01317
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thx
Thermoanaerobacter sp. X513
Pathway
thx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thet_2056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thx03021
]
Thet_2056
03400 DNA repair and recombination proteins [BR:
thx03400
]
Thet_2056
Enzymes [BR:
thx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thet_2056
Transcription machinery [BR:
thx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thet_2056
DNA repair and recombination proteins [BR:
thx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thet_2056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF5605
Motif
Other DBs
NCBI-ProteinID:
ADN55620
LinkDB
All DBs
Position
complement(2014598..2018152)
Genome browser
AA seq
1184 aa
AA seq
DB search
MFQLRNFEAIKIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGIPSRMGLLLDM
SPRALEKVLYFVSYVVIDPGDTPLTKKQLLSEKEYREYLDKYGNKFRAGMGAEAIKELLQ
EIDLEKLSKELKAEIRESTGQKRVRAIRRLEVVQAFIDSGNRPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKVYQCGLPKE
MALELFKPFVMKKLVDEGLAQHIKSAKRMVEKIKPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSMEAQAEARFLMLAANNIL
KPQDGKPVMTPTQDMVLGCYYLTADEEGVQGEGKYFSSPEEAITAYQLGYIHIHAKIKVK
MTKEIDGVKKSKIIETTVGKIIFNEAIPQDLGYVDRTNPETAFDLEINDLVDKSKLGKIL
DRVYRLHGPTKTAETLDKIKELGFRYSTKAAITVSVSDMVIPKEKEKLLKEADEMVSKIE
SQFRRGLISEEERYESIIRTWNMTTEKVTEALMTSLDKFNPIFMMAHSGARGSKNQIRQL
AGMRGLMADPSGRIIELPIRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREEDCGTDEGIYVEEIREGNEIIERLADRIIGRVAAEDVVDNEGKIIVRRN
ELINEEEAEKIEKAGITKVKIRSLLTCKSRHGVCRMCYGRDLATGELVNIGEAVGIIAAQ
AIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAVISEISGVVRINESKK
RREVIVTDEENSISKTYLIPYGSRLKVHDGQVIQAGDELTEGSVNPHDLLKIKGIFAVQT
YLLQEVQKVYRLQGVEINDKHIEVIIRQMMRKVKVEDPGDTSMLPGELIDMFKFEEENKK
AVEKGLKPATGRRALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKENV
IIGKLIPAGTGLSRYRNISVVKKVKDQQDAQDKEKEEAEVKASN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtttcagttaagaaattttgaagctattaaaatcgggttagcatcacctgaaaaaata
agagaatggtcaagaggtgaggtgaaaaagcctgaaactataaattatagaacgttaaaa
ccagaaagagatggccttttttgtgaaagaatttttggacctacaaaagactgggaatgc
cattgcggtaaatacaaaagagtaagatacaaaggtgtggtttgtgatagatgcggtgta
gaagtgacaaggtctaaagttagaagggaaaggatggggcacattgaacttgctgctcct
gttgcccatatatggtatgtaaaggggattcctagtcgaatggggcttcttcttgacatg
tctccgagagcattagaaaaagtgctgtactttgtatcatatgtggttattgacccgggt
gatactcctcttactaaaaagcagttattgtcagagaaagagtacagagaatatttggat
aaatatggcaataaatttagagcaggaatgggagcagaagctataaaagaattgttacaa
gaaatagatttagaaaagttgagcaaagaattgaaagctgaaatacgtgaatctactggt
caaaaaagggtaagagcaattagaaggttagaagtagtgcaagcttttatagattcaggc
aatcgccctgaatggatgattttagatgttataccggtaattccacctgatttaagacct
atggtgcagttggatggtgggcggtttgcaacttcagaccttaatgatttgtacaggaga
gtaatcaatagaaataacagattgaaaaagcttttagacttaggggctccggatattata
gtaagaaatgaaaaaagaatgctacaagaagcagtagatgctttgatagacaacggaagg
agaggaaggcctgttacaggtcccggcaacagacctttaaaatccctttctgatatgcta
aaaggtaagcaaggaagattcagacaaaatcttttaggtaagagggtagactattcaggc
cgttccgttatagtagtaggaccagagcttaaagtttatcaatgtggcttgccaaaagaa
atggcattagagctttttaagccttttgtaatgaagaaattagtagatgaaggtttggcg
cagcatataaaaagtgctaagagaatggttgaaaagataaagccggaggtatgggatgta
ttagaggaagttattaaagaacatcccgtattgttaaacagagcgcctaccctccataga
ttgggtattcaagcttttgaaccggtgttagttgaaggaagagctataaagcttcatccc
cttgtgtgtacagcttacaatgcagactttgatggtgaccagatggctgtccacgtacct
ctttcaatggaagcacaagctgaagcgaggtttttgatgctagctgctaataacatactc
aagccccaagatggaaaacctgttatgactcctactcaagatatggtattaggttgttat
tacttaacagcagatgaagagggagttcagggtgagggcaaatatttctctagccctgaa
gaagctattacggcatatcaactgggatacattcacattcatgctaagataaaagtgaaa
atgacaaaagaaattgatggagtcaaaaaatcaaaaataattgagacaacagttggaaaa
attatatttaatgaagcaattccgcaggatttaggttatgtagatagaactaatcctgaa
actgcttttgacttagaaattaatgatttagtagataaatctaaattggggaaaatttta
gatagagtatacagattacacgggccaacaaaaaccgcagaaactcttgataaaatcaaa
gagttaggtttcagatattctacaaaagcagctatcactgtcagtgtttctgacatggta
atacctaaagaaaaagagaagcttctaaaagaagcagatgaaatggtaagtaaaattgaa
agccaattcagacgtggtctcatatccgaggaagagagatatgagagcataataagaaca
tggaatatgactacagaaaaagttacagaagctttaatgacaagcctggacaaatttaat
cctatatttatgatggctcattcaggagcaagaggaagtaaaaaccagataaggcagtta
gcgggtatgagaggtcttatggcagacccttcaggaagaattattgagcttcctataagg
tctaactttagagagggtcttaatgtgttggaattcttcatatctactcacggtgcaaga
aaaggtcttgcggatacagctttaagaactgcagactctggttatttaacaagaagatta
gttgatgttagccaagatgtaatagtcagagaagaagattgtggaacagatgagggaatt
tacgtagaagaaataagagaaggaaacgaaataattgaaagattagctgacagaataata
ggaagagttgcggctgaagatgtggttgataatgaaggcaagataattgtcagaagaaat
gaattgataaacgaagaggaagcagaaaaaatcgaaaaagcaggtattactaaggtaaag
ataaggtcacttttgacatgtaagtcacgacacggcgtatgtagaatgtgttatggtaga
gaccttgcaacaggtgaacttgtaaatataggcgaagcagtgggcattattgctgcacaa
gctataggcgaaccaggtacacagcttaccatgagaacattccatactggcggtgtagca
ggttctgatattacacaaggtcttccaagagtagaagagctttttgaggcgagaaaacca
aaaggacttgctgtaatttctgaaatttctggtgttgtaagaatcaatgaatcaaagaag
agaagagaagtcattgtaacagatgaagaaaacagtatttctaagacttatctgattccc
tatggttcaagacttaaagttcatgatggtcaggtaatacaagctggggatgagctgaca
gaagggtctgtaaatcctcatgaccttttgaaaataaaaggaatatttgcagtacagact
tacttgctacaagaggttcaaaaggtttatagattgcagggtgttgaaataaatgataag
cacattgaagtaataataagacaaatgatgagaaaagtaaaagtagaagacccaggagat
acttcaatgcttcctggagagcttatagatatgtttaaattcgaagaggaaaacaaaaaa
gcagtagaaaaaggactaaaacctgctactggtaggagagctcttttgggaattacaaag
gcggctttggcaacagattctttcttatcagctgcttctttccaagagacaacaagagtg
cttacagatgcagctataaaaggtaaagtagatccgcttttgggattgaaagaaaatgtg
ataataggtaaactaattcctgctggaactggcttatcacgctacagaaatatttccgtt
gtaaagaaagtaaaagaccaacaggatgcacaagataaagaaaaagaagaagcagaagta
aaggcaagcaactaa
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