KEGG   Thermococcus sp. P6: A3L12_00455
Entry
A3L12_00455       CDS       T05739                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
thy  Thermococcus sp. P6
Pathway
thy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L12_00455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thy03019]
    A3L12_00455
Messenger RNA biogenesis [BR:thy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L12_00455
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3L12_00455
SSDB
Motif
Pfam: ECR1_N_2 RRP4_S1 KH_6 KH_1 ECR1_N KH_2 RRP40_S1 KH_KhpA-B KH_KRR1_2nd
Other DBs
NCBI-ProteinID: ASJ09878
UniProt: A0A218PAG2
LinkDB
Position
89217..89981
AA seq 254 aa
MRRIFVKSRELVVPGTLLAQGPFKNGKGTFKEGNRIYSTVIGLVDVRGDFIRVIPLEGPY
MPEVGDNVLGKIIDVRFSSWDVDIGAPYEASLRIQDAVEERIDITKTDLRKIFDIGDIIY
ARIKAYNEIKQIDLTTKGMPFRGGPLRGGQIVKITPSKVPRLIGRGGSMINMIKTLTNTR
IIVGQNGWVWVSGRNEELERLAIEAVLKVDRESHTRGLTDRVKEFLMTRLQDLKNKGVIE
EIPQIEERQKGEAQ
NT seq 765 nt   +upstreamnt  +downstreamnt
atgaggaggatttttgtaaagagcagggaacttgtggttcctgggaccctgctggctcag
ggaccttttaaaaacggaaaggggacgtttaaagagggcaacaggatatactccacggtc
atcggcctcgtggacgtaagaggagacttcataagggtcatcccactcgagggcccctac
atgcccgaggttggcgacaacgttctcggcaagataatcgacgtcaggttctccagctgg
gacgtggacataggggcgccctacgaggccagcctgcgcattcaggacgccgtggaagag
cgtatagacatcacgaagaccgacctgaggaagatattcgacataggcgacatcatctat
gcccggataaaggcctacaacgagataaaacagatagacctcacaacgaaggggatgccc
ttcagaggtggtcccctaaggggaggtcagatagtcaagataacgccctccaaggttccg
aggctcataggcaggggcggttcgatgatcaacatgatcaaaacgctcactaacacgagg
ataatagtgggtcagaacggctgggtatgggtcagcggtagaaacgaggaactcgagagg
ctcgcgatagaggccgttctcaaggttgacagggagagccacactcggggacttaccgat
cgggtaaaggagttcctcatgacccggcttcaggatctgaagaataaaggagtgatagag
gagataccccagattgaggaaaggcaaaagggtgaagcacaatga

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