Thermococcus sp. P6: A3L12_00455
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Entry
A3L12_00455 CDS
T05739
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
thy
Thermococcus sp. P6
Pathway
thy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L12_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thy03019
]
A3L12_00455
Messenger RNA biogenesis [BR:
thy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L12_00455
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L12_00455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
KH_1
ECR1_N
KH_2
RRP40_S1
KH_KhpA-B
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
ASJ09878
UniProt:
A0A218PAG2
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All DBs
Position
89217..89981
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AA seq
254 aa
AA seq
DB search
MRRIFVKSRELVVPGTLLAQGPFKNGKGTFKEGNRIYSTVIGLVDVRGDFIRVIPLEGPY
MPEVGDNVLGKIIDVRFSSWDVDIGAPYEASLRIQDAVEERIDITKTDLRKIFDIGDIIY
ARIKAYNEIKQIDLTTKGMPFRGGPLRGGQIVKITPSKVPRLIGRGGSMINMIKTLTNTR
IIVGQNGWVWVSGRNEELERLAIEAVLKVDRESHTRGLTDRVKEFLMTRLQDLKNKGVIE
EIPQIEERQKGEAQ
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggatttttgtaaagagcagggaacttgtggttcctgggaccctgctggctcag
ggaccttttaaaaacggaaaggggacgtttaaagagggcaacaggatatactccacggtc
atcggcctcgtggacgtaagaggagacttcataagggtcatcccactcgagggcccctac
atgcccgaggttggcgacaacgttctcggcaagataatcgacgtcaggttctccagctgg
gacgtggacataggggcgccctacgaggccagcctgcgcattcaggacgccgtggaagag
cgtatagacatcacgaagaccgacctgaggaagatattcgacataggcgacatcatctat
gcccggataaaggcctacaacgagataaaacagatagacctcacaacgaaggggatgccc
ttcagaggtggtcccctaaggggaggtcagatagtcaagataacgccctccaaggttccg
aggctcataggcaggggcggttcgatgatcaacatgatcaaaacgctcactaacacgagg
ataatagtgggtcagaacggctgggtatgggtcagcggtagaaacgaggaactcgagagg
ctcgcgatagaggccgttctcaaggttgacagggagagccacactcggggacttaccgat
cgggtaaaggagttcctcatgacccggcttcaggatctgaagaataaaggagtgatagag
gagataccccagattgaggaaaggcaaaagggtgaagcacaatga
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