KEGG   Thermococcus sp. P6: A3L12_00460
Entry
A3L12_00460       CDS       T05739                                 
Name
(GenBank) exonuclease
  KO
K11600  exosome complex component RRP41
Organism
thy  Thermococcus sp. P6
Pathway
thy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L12_00460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thy03019]
    A3L12_00460
Messenger RNA biogenesis [BR:thy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L12_00460
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     A3L12_00460
SSDB
Motif
Pfam: RNase_PH RNase_PH_C EF-hand_1 Pinin_SDK_N
Other DBs
NCBI-ProteinID: ASJ09879
LinkDB
Position
89978..90727
AA seq 249 aa
MMGRPEGLKLIDENGKRLDGRKKYELRPIRMEVGVLKNADGSAYVEWGKNKVLAAVYGPR
EIHPKHLQRLDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVLRGALEPALILEMFPR
TAIDVFIEILQADAGTRVAGITAASLALADAGVPMKDLVSACAAGKIDGEIVLDLNKDED
NYGEADVPVAIMPLKNDITLLQMDGYLNKEEFIEAVKLAIKGAKAVYQKQRDALRAKYLK
VAEEVVGGE
NT seq 750 nt   +upstreamnt  +downstreamnt
atgatgggcagaccagagggtttaaagctcatagatgagaacgggaagaggcttgacgga
agaaagaagtacgagctcaggcccatacgtatggaggttggtgttcttaaaaacgctgac
ggttccgcctacgtcgagtggggtaagaacaaagttttagctgccgtttacgggccgagg
gagatccatccgaagcacctccagaggctggacagggccatactccgggtaaggtacaac
atggcccccttcagcgttgaggaaaggaaaaaacccggacccgacaggaggagcgtcgag
ataagcaaggtcctaagaggggcccttgaaccggccctgatcctcgagatgttcccgagg
acggcgatagacgttttcatcgagatacttcaggccgatgcaggaacgagggtcgcgggg
ataacggccgcctcactggctctggccgatgccggtgtaccaatgaaggacctcgtcagt
gcctgcgccgcgggcaaaatcgatggtgagatcgttctcgacctcaacaaggacgaggat
aactacggcgaggccgacgttcccgtggccataatgcccctgaagaacgacataacgctc
cttcagatggatggctacctgaacaaggaggagttcatcgaagccgtgaagcttgccatc
aagggagctaaggcggtttaccagaagcagagggatgccctgagggccaagtacctcaag
gtggctgaggaggtcgttggaggtgagtga

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