KEGG   Thermococcus sp. P6: A3L12_00465
Entry
A3L12_00465       CDS       T05739                                 
Name
(GenBank) RNA-binding protein
  KO
K12589  exosome complex component RRP42
Organism
thy  Thermococcus sp. P6
Pathway
thy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L12_00465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thy03019]
    A3L12_00465
Messenger RNA biogenesis [BR:thy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L12_00465
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     A3L12_00465
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: ASJ09880
UniProt: A0A218PAJ3
LinkDB
Position
90729..91538
AA seq 269 aa
MEIMAGIMRDHVLNLLREGARVDNRGLEDYRDLEVEVNVIEKAEGSALVKLGNTQVLVGI
KVDVGEPFPDLPDRGVITTNVELVPLASPTFEAGPPDENAIELARVVDRGIRESNAVDLE
KLVIVPGKLVRVIFVDVHVLDHDGNLLDASGIGAIAALLSTKIPKVTYDPEKEELQVLEE
YEPLPVGRIPIPVTMAKIGQNIVVDPTLEEERVMDGRITITTDENGMISSVQKGEGGSFK
LEEVMYAVDLAIRKAAEIREKVLKAVGSE
NT seq 810 nt   +upstreamnt  +downstreamnt
atggagatcatggccggtataatgcgcgaccacgtcctgaaccttctcagggaaggggcg
agggtggacaatcgcggtctcgaggactaccgcgatctggaggtagaggtcaacgtcatc
gagaaggctgagggatcagctctggtgaagctcggcaacactcaggttctcgtaggcata
aaggtcgacgttggagaacccttcccggatctcccggacaggggggttataacgacgaac
gttgagctcgtcccccttgcctcgccgacctttgaagccggaccacctgacgagaacgcc
attgagctggcccgcgttgttgacagggggataagggaaagtaacgccgtggatctggag
aagctcgtcatagttcccggcaagctcgtcagggtgatcttcgttgacgttcacgtgctc
gaccacgacgggaacctcctcgatgcgagtggaataggcgccatagcggcccttctgagc
acgaaaataccgaaggtgacctacgaccctgagaaggaggagcttcaggttcttgaggaa
tacgaacccctgccggtggggaggattccaatcccggtcaccatggccaagatcggccag
aacatcgttgtggacccaacgctcgaggaggagcgcgtcatggacggcaggataacgatc
accaccgacgaaaacggcatgatctcctccgtccagaagggcgaagggggaagcttcaag
ctcgaggaggtcatgtacgccgtcgatctggcgatcaggaaggccgcggagataagggag
aaggttctgaaggcggttgggagcgagtga

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