KEGG   Thermococcus sp. P6: A3L12_03815
Entry
A3L12_03815       CDS       T05739                                 
Name
(GenBank) DNA repair protein Rad50
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
thy  Thermococcus sp. P6
Brite
KEGG Orthology (KO) [BR:thy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:thy03400]
    A3L12_03815
DNA repair and recombination proteins [BR:thy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     A3L12_03815
    Archaeal homologous recombinant proteins
     A3L12_03815
SSDB
Motif
Pfam: SMC_N Rad50_zn_hook AAA_21 AAA_23 AAA_15 AAA_13 AAA_29 NPV_P10 ABC_tran MCPsignal Tropomyosin SbcC_Walker_B FtsK_SpoIIIE Baculo_PEP_C Laminin_II ABC_ATPase AAA_27 DUF6674 Snapin_Pallidin Seryl_tRNA_N HMBD DUF6011 RsgA_GTPase DUF7575 DUF1664
Other DBs
NCBI-ProteinID: ASJ10486
UniProt: A0A218PCA4
LinkDB
Position
711092..713749
AA seq 885 aa
MKIEKLIVADFRSHRLTQVEFKDGINLIIGQNGSGKSSLLDALLIGLYWPSRPKDLRKGD
FLRIGGNSTEITVYFEKEGVRYQVHRKITKGVAFAKYHDGTSWKHVSETSHKTVRDWMEK
LIPYDVFLNAIYIRQGEIDAILESDESREKVVRQVLGLDRYENAYNNLLEVRKEIDRRIK
STEEFLKRTENIDELIRDMEKKLEKTLKEIKELSRRIPELEKELKEAREKLNHLKELKGK
IDSLRLEIKESEGRKEALKSKLAELEKRISEGEKKVKELEEKVKELKGLKERSEQYLNLL
KFRGYYVEERGKNEGLAGKYRTGIEEIEKRLAELEKVEKQLAGMKKKADELRKKLRELEE
EAKRYEKVKTLLKQLKDQRNRLKYSEEEIANLSSRIEEAKARREEILEELQKIQGELGGL
KNLIGERNRAIKELEGATGRCPVCGRELTEEHRNEIIERYRREVLEASGEVKRLKERKED
LNRELREITEILKGERELTEQKTILEDIKRLEGELKKYNVEELRRKGKEYEKSREDLNRL
EGELKSMENELKKREELENRKKDLEEKLRSVELRLKELDKELRERGFSSVGELDAKLEEL
KPFYERYLQLKGSEEELKREREKLEGLRGEREETERNLKAEEENLKALKEELKEKEALYS
EEEHKRTEELVYSLGEELAGMRANLKALSKERDELTNNLGRLREEKELRIRKRKELEGLR
KAREDVQKLREKLKRYKAMLRENALSKVGELASEIFEELTEEKYSGITVRAEEKKVRLGV
VYDGREYGLGFLSGGERIALGLAFRLALSLYLAGEISLLILDEPTPYLDEERRRRLVDIM
QRYLRKIPQVIVVSHDEELKDAADRVIRVSLENGVSRVEEVRMEV
NT seq 2658 nt   +upstreamnt  +downstreamnt
atgaagattgagaagctcatcgtggccgatttccgatctcaccggttaactcaggtcgag
ttcaaggacgggataaacctgataatcggccagaacggaagcggtaagagctccctcctc
gacgcgctcctcatcggcctctactggcccagcagaccgaaggacctgaggaagggggac
tttctcaggataggagggaactccacggagataaccgtctacttcgagaaggaaggcgtt
aggtatcaggtccatagaaaaataacgaagggcgtggcctttgcgaagtatcacgacgga
acgtcgtggaagcacgtttccgagaccagccataagaccgtaagggactggatggaaaag
ctcatcccgtacgatgtttttctcaacgccatttacataaggcagggcgaaatcgatgcg
atcctcgagagcgacgagagcagggagaaggtggtgaggcaggttctcggccttgacagg
tacgaaaacgcctacaacaacctcctcgaagtgaggaaggagatagacagaaggataaaa
tcgacggaggagttcctgaaaaggacggagaacatcgacgaactcatcagggatatggag
aaaaaactcgagaagaccctcaaggagataaaggaactctccagaaggattccggagctg
gagaaagagctgaaggaggcgagagaaaagctcaaccacctcaaggagcttaagggaaag
atcgatagcctcaggctcgagatcaaggaaagtgaaggaaggaaggaagccctcaagagc
aagctggccgaactcgagaaacgcatctccgagggcgagaaaaaggtgaaagagctggag
gagaaggttaaggagctaaagggacttaaggaacggagcgagcagtacctaaatctattg
aaattcagagggtactacgtggaggagaggggaaaaaacgaagggctggccgggaaatac
aggacgggaatagaggagatcgaaaaacgcctcgccgagctggagaaggttgaaaagcag
ctcgccgggatgaagaagaaggccgacgagctcaggaaaaagttgagggagctggaggag
gaagccaaaaggtatgagaaggttaaaaccctgctgaaacagctaaaagaccagagaaat
cgcctgaagtactccgaggaagaaatagcgaatctttcctccagaatcgaggaagcaaaa
gcccggagggaggagattctggaggaacttcagaagatacagggggaactcggcgggctc
aagaacctcataggtgagaggaacagggcgataaaggagctggagggggcaacgggcagg
tgtcccgtctgcggcagggagctgacggaggaacaccggaatgagataatcgaaaggtac
agaagggaggttttagaagcctccggggaagttaagaggctcaaggagaggaaagaagac
ctgaacagagaactccgggaaataacagagattctgaagggggagcgggaactcacggag
cagaagacgatactcgaggatatcaaaaggctcgagggggagctgaagaaatacaacgtc
gaagaactgcgtagaaaagggaaggaatacgagaagagcagggaagacctgaacaggctt
gagggcgagctaaagagcatggaaaatgagcttaaaaagagggaagagctcgaaaacagg
aaaaaagacctcgaggagaagctcaggtccgtggagctccggctgaaggaactcgataaa
gagctccgggagaggggtttctcgagcgtcggggagctcgatgcgaagctcgaagagctc
aaaccgttctacgagaggtacctccagctgaagggttcggaagaggagctcaaaagggag
cgggagaaactggaggggctccggggggagcgcgaggagacggaaagaaacctcaaagca
gaggaagaaaatctgaaggcgcttaaggaggaactaaaagagaaggaagcactttacagc
gaggaagagcataaaagaaccgaagaactcgtctattcactgggtgaagagctggcaggg
atgagggcgaatctaaaagccctttcaaaggagcgcgatgaactcacgaacaacctcggt
agactcagggaggagaaggaactcaggatcagaaagaggaaggaactggaaggtctcagg
aaagcccgcgaagatgttcagaagctgagggaaaagctaaagcgctacaaggccatgctg
agggagaacgccctctcaaaggtcggcgagctggcaagcgagatattcgaggaactcacg
gaggagaagtattcggggataaccgtcagggccgaggagaagaaggtaagactcggggtg
gtgtacgacggcagagagtacggcctcggtttcctcagcggtggggagaggatagccctt
ggtctggccttcaggctcgcactgtccctctatctggcgggggagataagcctgctgatt
ctggacgaaccgacgccctacctcgacgaggagaggaggagaaggctcgttgacataatg
cagcgctatttaaggaagatccctcaggtgatagtcgtttcccacgacgaagaactgaag
gacgctgcggacagggtgataagggttagcctcgagaacggcgtatcaagggtcgaagag
gtaaggatggaggtgtga

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