Thermococcus sp. P6: A3L12_05545
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Entry
A3L12_05545 CDS
T05739
Name
(GenBank) single-stranded DNA endonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
thy
Thermococcus sp. P6
Pathway
thy03410
Base excision repair
thy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A3L12_05545
03430 Mismatch repair
A3L12_05545
03440 Homologous recombination
A3L12_05545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thy03400
]
A3L12_05545
DNA repair and recombination proteins [BR:
thy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
A3L12_05545
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
A3L12_05545
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3L12_05545
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Arc_Cdc45
SSO2105_N
PAH_ZNF598
DcsG_N
Motif
Other DBs
NCBI-ProteinID:
ASJ10800
LinkDB
All DBs
Position
complement(1031616..1033034)
Genome browser
AA seq
472 aa
AA seq
DB search
MDRGAFLERVRDGAELIRMHVELGHTIRMVSHRDADGITAGAILARAIAREGGSFQLSIV
KQLSEDILKGLASEKREIYVFTDLGSGSMELIDEYLDFATVVVADHHPPEKEDLSGDSHV
LVNPVPFGANSVRDLSGSGVAYFVAKEIDGRNRDLAYTAIVGAVGDMQEIDGTFHGLNVD
IIEDGKKAGVLEVRKELRLFGRESRPLFQMLAYATNPELPGITGDERNAIEFLRSKGFDP
DVKYWQLREEKKRKLHDALVIHLIKHGAPKEAIDRLIGDVVVSPLYPEGDPRHEAREFAT
LLNATGRLNAGTLGVAVCMGDENAYKRAREMLEDYRREQMEARKFIIRNWNMASEGEHAY
VFYAGKNIKDTLVGIAANMAINSGLADPGKPVVVIADSEEDPGLVKGSARTTEKALKKGY
HLGEALRKVAEKLGGEGGGHAIAAGIRFPRGKIDEFIRLFNEILGEQEGGKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaccggggcgccttcttggaaagggttcgagatggagcagagctaataaggatgcac
gttgagttaggccacactataaggatggtctcccaccgggacgcggacggcataaccgcc
ggtgcgattctcgccagagcgatcgcccgggagggcggtagctttcagctcagcatagtc
aaacagctcagcgaggacatcctgaagggcctcgcatccgagaagcgggagatatacgtc
tttaccgacctcggaagcggttccatggagctcatagatgagtaccttgacttcgccacc
gtcgtggttgccgaccaccaccccccggagaaggaggatctatccggagattcccacgtg
ctcgtgaaccccgttcccttcggggccaacagcgtcagggacctcagcgggtcgggcgtt
gcctacttcgttgccaaggagatcgacgggaggaacagggatctggcctacaccgctatc
gtaggtgccgtcggggacatgcaggagatagacgggacattccacggactcaacgtggac
atcatcgaagacggaaaaaaagccggagtcctcgaggtcagaaaggagctccgcctcttc
ggaagggagagcaggccgcttttccagatgctggcctacgccaccaaccccgaactcccg
gggataacgggcgacgagaggaatgccatcgagtttctaaggtccaagggcttcgatcct
gacgtgaagtactggcagctccgcgaggagaagaagaggaaactccacgatgccctcgtg
atacacctcataaaacacggcgctcccaaggaagccatagacaggctcattggagacgtc
gtggtgagccccctctaccccgagggggatccgaggcacgaggcgagagagttcgcaacc
cttttaaacgccaccgggaggctcaacgccggaacgctgggagttgcggtctgcatgggc
gatgaaaacgcttacaaacgggcccgggagatgctggaagactacaggcgggagcagatg
gaggccagaaaattcatcatccgcaactggaacatggcgagcgaaggggagcacgcctac
gttttctacgccggcaaaaacataaaggacaccctcgtcgggatcgccgcaaacatggcc
ataaactccggcctcgccgatcccgggaagccggttgtcgtgattgccgacagcgaggag
gatccgggactcgtgaagggatcagccagaaccaccgaaaaggccctgaaaaaggggtac
cacctcggagaggccctcagaaaagtcgccgaaaagctgggaggagaaggtggcgggcac
gccatagccgcggggatccgcttccccagaggaaagatcgacgagttcataaggctgttc
aacgagatccttggggaacaggagggggggaagggatga
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