Thermotomaculum hydrothermale: TTHT_1010
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Entry
TTHT_1010 CDS
T06993
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thyd
Thermotomaculum hydrothermale
Pathway
thyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHT_1010 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thyd03019
]
TTHT_1010 (deaD)
03009 Ribosome biogenesis [BR:
thyd03009
]
TTHT_1010 (deaD)
Enzymes [BR:
thyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TTHT_1010 (deaD)
Messenger RNA biogenesis [BR:
thyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TTHT_1010 (deaD)
Ribosome biogenesis [BR:
thyd03009
]
Prokaryotic type
rRNA helicases
TTHT_1010 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
PhoH
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBB32550
UniProt:
A0A7R6SZ81
LinkDB
All DBs
Position
1056377..1057963
Genome browser
AA seq
528 aa
AA seq
DB search
MERLEKFRQLGLSDNTLLALKKKGFEEPTEIQEKVIPILLHQDINVIGQAQTGTGKTAAF
GLPLIEKLKGGSKNVQAIILTPTRELAIQVAEEINSLKGRKRLHIVPIYGGQSISEQIRK
LKKGIDIVVGTPGRILDHLKRGTLKLDSIKYFILDEADEMLNMGFIDDIEEILNHAPVEK
KMLLFSATMPDRILKLVEKYMGKYEIIRIKKKSQTTDLTHQIYFEVAERDKFEALCRIID
FEPEFYGLIFTRTKVEADRVANKLVDRGYDAECLHGDISQFQRERIIRKFKKRHINILVA
TDVAARGLDISDLTHVINYSIPQNPETYIHRIGRTGRAGKEGTAITFVTPGEYRNLIFIK
KIAKADIKKEKLPGADKILENKITKLKADIEDTIGDNHLEHYLKIAEEMLEISSPEKVIA
ALLKIAYREDLDPESYKPITEPSIDTKGTTRLFIARGKEHGYDVHKLIELIQQHINIESR
KIRGIKIFDNFSFVTLPFEDAEVLLHTIKKNKKGKRPIIDKAKEKTRS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaagattagaaaaattcagacaactgggcttaagcgataatacattacttgcgctt
aagaagaaaggctttgaagagcctacagagattcaggaaaaagttatacctattctattg
catcaggatataaatgtaatcggacaggcacagacaggaacaggaaagacagccgctttc
gggctaccattaattgaaaaactaaaaggcggttcaaaaaatgttcaggcaataatttta
accccaacaagagagcttgcaattcaggttgcagaagagattaactctttaaaggggaga
aaaagattgcacattgttccaatttacggtgggcagtctatttcagaacagataagaaaa
ttaaaaaaggggattgacattgttgttggaacacctggaagaattttagaccacttaaag
aggggaaccttaaaacttgattcaataaaatactttatccttgacgaagcggatgaaatg
ttaaacatgggatttattgatgatattgaagagattttaaaccatgcacctgtagaaaag
aaaatgcttctattttccgcaactatgcctgacaggattttaaaacttgttgaaaaatac
atggggaaatacgaaattatcaggataaaaaagaaaagccagacaacagacttaacccac
cagatatattttgaggttgcagagagggataaatttgaagcactttgcagaattattgac
tttgagcctgaattctatggcctcatatttaccagaacaaaggttgaggcagacagagtg
gcaaataaattggttgacaggggatacgacgcagagtgtctgcacggggatatatcacag
tttcaaagggaaaggattataagaaaatttaaaaagagacatatcaacatacttgttgca
accgatgttgcagcaaggggacttgatatatcagacctaacccatgttatcaactactct
attcctcaaaaccctgaaacatatatccacagaataggaagaacaggaagggctggaaaa
gaggggacagcaattaccttcgtcacccctggggagtacagaaaccttatttttatcaag
aaaatcgcaaaggcggatataaaaaaagaaaaacttcccggtgcagacaagatacttgaa
aacaagattaccaaactaaaagcagatatagaggacactatcggggacaaccaccttgaa
cattacttaaaaattgcggaagaaatgcttgagatttcatcacctgaaaaggtaatagcc
gcattgttgaaaatagcctacagagaagacttagaccctgaaagttataaacctataaca
gagccatcaattgacaccaagggaacaacgaggctctttattgcaaggggaaaagaacac
ggctatgatgttcacaaattgattgaacttattcaacagcatattaatattgaaagcaga
aaaatcagaggaataaagatttttgataacttttcctttgttacccttccctttgaagac
gcagaggttttacttcacacaataaagaaaaacaaaaaaggcaaacgccccataatagac
aaagccaaagaaaaaacaagaagttag
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