Thermotomaculum hydrothermale: TTHT_1425
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Entry
TTHT_1425 CDS
T06993
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
thyd
Thermotomaculum hydrothermale
Pathway
thyd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thyd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TTHT_1425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thyd03021
]
TTHT_1425 (rpoB)
03400 DNA repair and recombination proteins [BR:
thyd03400
]
TTHT_1425 (rpoB)
Enzymes [BR:
thyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TTHT_1425 (rpoB)
Transcription machinery [BR:
thyd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TTHT_1425 (rpoB)
DNA repair and recombination proteins [BR:
thyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TTHT_1425 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
SpoIISA_toxin
Zn_Ribbon_TF
DUF7577
Motif
Other DBs
NCBI-ProteinID:
BBB32937
UniProt:
A0A7R6PUJ0
LinkDB
All DBs
Position
complement(1493689..1498023)
Genome browser
AA seq
1444 aa
AA seq
DB search
MENMPKNVHLERHDFSKIKTYLPIPNLISIQLDSYAKFLQMEKLPEDRKEIGLQAAFKSV
FDIEDFRGKAKIEFVEYRIGNWECKCGFLKGEEHNRFKCKKCKKNIYVKDPTDKYVICEH
CGYRNDAKPDICPKCETPVELKLDYTVEECESMEKTYSVPLKVKFRLTVFDVDSKGEKTV
KDVKEKEIFFGEIPIMTKRGTFIFNGTERVIVNQLNRSPGVFYKKDKDKNSYILQIIPYR
GAWIEFEFDKKEIMYIRIDRKRKFNAGIFLRCFGLIDEDFSKTETFLKRFYTVHKMKTGK
EDDIIYLTPSIALKDKRVAEDIIGADGKKILSEGNKFKKSTLRRIAEDSFIPFNLSEFDI
IRNVEDIVNPETGEVLYPANSDITIVELEKLRELGIKEIDVILPKDDIVGPVLSNTLQKD
GVKDTNDALIDLYRKLRPGDPPTLESARKLFLSLCFDRDRYDLSRVGRLKLNTKLGVKTD
LDQKELSIEDILISLDYYFKIPKGIGEVDDIDHLSNRRIRSVGELLENQFRVGLVRVQKA
IKEKMSIMDDFEQVTPAELISPKPVMAILREFFGQSQLSQFMDQTNILSEITHKRRLSSL
GPGGLSRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLACYAKVNEFGFIETPYKK
VENGRVLDHFKVIFPGDSKKYKVGDIILKEELEAENKKLEKEGKLLMAAEPYVFYLSAWE
EDKYKIAQANAPRDENNYITVEQVNARVAGESKLVPREELDYIDVSPKQIVSIAASLIPF
LEHDDANRALMGSNMQRQGVPLLRTEAPFVGTGMEHIVAKDSGLTVVAKRSGWVEAVDGQ
RIVVRVDSKETNQGVVGVDIYPLVKFKRSNQDTCFNQKPIVKKGDYVHKGEIIADGPGTD
RGELALGRNVLVAFMPWRGYNFEDAILVSEKIVKEDVYTSIHIEELEVEARDTKLGPEEI
TRDIPNVNEEFLKDLDDSGIIRIGAKVKPGDILVGKVTPKGESTPSPEEKLLKAIFGAKA
EDVKDASLRTPPGMEGTVVDVKIFARKGVEKDERAKKIEQERIEALEKDFQDKERIIRIQ
TKFQILSLIEGMKLSEDFVDKHGNLVAKKGTKITEDFIDTIGIKDSANIKVGNKKVEEEL
KKLIDKFDEKIEIERKVFENEVEKLKKGDELPAGVIKMVKVYIAVKRKLSEGDKMAGRHG
NKGVVSRILPEEDMPYLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKALGMHFATP
VFDGASSEDIKYYLKKAGLPESGQTFLYDGKTGERFDQPVTVGYMYLLKLHHLVDNKIHA
RSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTYKSDDVQGRNKVY
EAIVKGHEIPEPGIPESFNVLMKEIMSLCLNLQFNVDEEESEEGEDSVMDEDIFNIDNTD
TNDN
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgccgaaaaatgttcatttggaaagacatgatttttccaaaataaaaacc
tatctaccaatccctaatctaatcagcattcagctggactcttatgcaaagtttttgcaa
atggaaaagttgccggaagacagaaaagagatagggttgcaggcggcgtttaaaagcgtc
tttgatatagaggattttagagggaaagcaaagatcgaatttgttgaatatagaattggt
aactgggaatgtaagtgcggatttttgaaaggtgaggagcacaataggtttaagtgcaaa
aaatgtaagaagaatatttatgttaaagacccaacagacaagtatgttatttgtgaacac
tgtggatacagaaacgatgcaaaacctgatatttgtccaaaatgtgaaactcctgttgag
ttgaagctggattatacagtagaagaatgcgaaagcatggaaaaaacttattccgtacct
ttgaaagtaaagttcaggttgactgtgttcgatgtagattcaaagggtgaaaaaactgtt
aaagatgtaaaagagaaagagattttctttggtgaaatccctataatgaccaaaagagga
acctttattttcaacggtacggaaagggttattgttaaccagttaaacaggtctccaggt
gttttctataaaaaggataaagataaaaactcatacatacttcaaattatcccgtacaga
ggtgcctggattgaatttgagtttgacaaaaaagagataatgtacataaggatagacaga
aaaaggaaattcaatgctggaatttttctgagatgttttgggcttattgatgaggatttt
tcaaagactgaaacatttttaaagagattttacactgtacataaaatgaaaactggtaaa
gaagatgacattatttatttgactccttcaattgctttgaaagataagagagttgcagaa
gacattataggtgctgatggcaagaaaatattatctgaaggcaataaatttaaaaaatca
actttaaggagaattgctgaagacagctttatcccatttaacctttcagaatttgacatt
attagaaatgtagaggatattgttaaccctgaaacaggtgaggttctttatccggcaaac
tcagatattacaattgtagagcttgaaaagttaagagagttaggcataaaagaaattgat
gtaattcttcccaaagacgatattgttggtcctgtacttagtaacacattgcaaaaagat
ggtgtaaaagacactaacgatgctttaattgacctttacaggaaattaaggcctggtgat
cctccaactttagaaagtgcaagaaagcttttcctgtctctctgctttgatagggacaga
tacgacctttcaagggttggtaggcttaaattaaacacaaagttgggagtaaagactgat
cttgatcaaaaggaattgtcaatagaagacatacttatttctctggattactacttcaaa
atcccgaaaggaatcggtgaggttgacgatattgaccacctgtccaacaggagaattagg
tcagttggagaattgcttgaaaaccagtttagagttgggcttgttcgtgtgcagaaggct
ataaaggaaaagatgtctattatggacgattttgaacaggttacccctgctgaactaatt
agcccaaaacctgtaatggctattttaagagaatttttcgggcaatctcagctttcacag
tttatggaccagacaaatattctctctgaaattacccataagagaaggctttcctcgtta
ggccctggtggtttgagcagagagagggcaggttttgaggtgagggatgttcacccctct
cattacggcaggatttgtcctattgaaacacctgaaggtcctaatattggtttgattgtt
tcacttgcctgctatgcaaaggttaacgaattcggatttattgaaaccccatataaaaaa
gttgaaaatggaagggttttagaccattttaaggtaatattccctggagattcaaagaaa
tataaagtgggggatattatattaaaggaagaattagaagctgaaaataaaaaacttgag
aaagaaggcaagcttttaatggctgctgagccttatgtgttttacctctcagcctgggaa
gaagataagtataaaattgctcaggcaaatgctccaagagatgaaaacaactatattaca
gttgagcaggtaaatgccagggttgcaggtgagtcaaagcttgtaccgagagaagagctt
gattatattgatgtttctccaaagcagattgtttctattgctgcatccttaatcccattt
cttgagcatgatgacgcaaacagggctttgatgggttctaacatgcagaggcagggagtg
cctctgttaaggacggaagctccttttgttggaactggtatggagcatatagtcgcaaaa
gacagcgggcttactgttgttgctaaaaggtcaggatgggtagaagctgttgatggacag
aggattgttgttagggttgacagcaaagagacaaatcagggagttgtaggtgtagatatc
tatccattggtaaaattcaaaaggtctaaccaggatacatgctttaatcagaaaccaatt
gttaaaaagggagattatgttcataaaggtgagataattgccgatggacctggtacagat
agaggtgaacttgcgttaggaagaaatgttttagttgcctttatgccctggaggggatac
aactttgaggacgcaatacttgttagtgaaaaaattgttaaagaggatgtttatacctca
atccatattgaagaacttgaggtggaagcaagggatactaaattaggtccagaggaaatt
accagagatataccaaatgttaacgaggagtttctaaaagaccttgatgatagtggaatt
ataagaataggtgccaaggttaagcctggagatatccttgtaggtaaggttactccaaag
ggagaatcaactccaagtcctgaagaaaagcttttaaaggccatctttggtgctaaagcg
gaagatgtaaaggatgcttctctaagaacacctcctggaatggaaggtacagttgttgat
gttaaaatttttgcaagaaaaggtgttgaaaaagacgagagggcaaagaagattgagcag
gagagaattgaagcattagaaaaggattttcaggataaggaaagaattatcagaattcag
acaaaatttcagattctctctctcattgaggggatgaagttaagtgaagactttgttgat
aaacacggaaatcttgtagcaaaaaagggcaccaaaattacagaagattttattgatacc
attggaattaaagattcggcgaatattaaggtaggaaataagaaggttgaagaagagtta
aagaaacttattgataagtttgatgaaaaaattgagattgaaagaaaagtttttgagaat
gaagttgaaaagctcaagaagggtgacgaattacctgctggcgttattaagatggttaag
gtttacatcgctgttaagaggaagctttctgaaggagataaaatggcaggtaggcacgga
aacaagggtgttgtttccagaatacttccagaagaggatatgccttatctacctgacggc
actcctgttgacattgtcttgaatcctttaggtgttccgtctcgtatgaatgtaggacag
attcttgaaactcacttaggttgggcagcaaaggctcttggtatgcactttgcaacccct
gtttttgacggtgcatcttccgaagatattaagtactacctgaaaaaggcgggactacct
gaatccggacaaacattcctttacgatgggaaaactggagagaggtttgaccagccagtt
actgtaggttatatgtatctattgaaattgcatcaccttgttgacaacaagattcacgca
aggtcaataggcccgtactctctgataactcaacagccattaggcggtaaagcacagttt
ggtggacagaggtttggtgaaatggaagtttgggcacttgaggcatacggtgctgcctat
acattgcaggaaatgctcacatataaatcagatgatgttcagggaaggaacaaggtatac
gaggctatagtgaaaggacacgaaattcctgagcctggaatccctgaatccttcaatgtt
ttaatgaaggaaataatgagtttatgcctcaaccttcagtttaatgttgacgaagaagaa
tctgaagagggagaagattcagtaatggatgaagacatttttaatatagataacaccgat
actaatgacaattaa
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