Tepidibacter hydrothermalis: P4S50_00025
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Entry
P4S50_00025 CDS
T09528
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thyr
Tepidibacter hydrothermalis
Pathway
thyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P4S50_00025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thyr03400
]
P4S50_00025 (mfd)
Enzymes [BR:
thyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P4S50_00025 (mfd)
DNA repair and recombination proteins [BR:
thyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P4S50_00025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
HNOB
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WFD10492
LinkDB
All DBs
Position
4578..7955
Genome browser
AA seq
1125 aa
AA seq
DB search
MNDIFTYPLNDSLAFNTLLEMINNKRSPLLINGLIPSQRTHMSYSIINKLNRQAIIITHS
DLEAKKIYEDLSFYLGDKAVYLPFEEILFYFLDAKDRKEESKRMKVLLKLIKEENIVIIC
SIEAVLKKYIPKDVFKKNILKYTMDDTIKIDELSSKLVGLGYERVNKVEGVGQFSIRGGI
IDIYCANTDYPVRVELFDEEIDSMRMFDIISQKSIENIREFEIIPSREILYPDNIEKTLD
NLQNEIKDDTSDDVHSNILKIKDLMYFEGLENYIDYMYEDEDKSIFSYLKKDALIIFNEP
ERIKEKSQNYYNEFESNYKVNLERHTVLPSQINLINRFEELDYFVKDRFIIQNSILSKQV
EEFKPNSIVTFNSREITVFNSKMDLFIDEINNLKKQGYKILIVPGSLEKSRKIYDELLEL
GVEVIFSKEKDAQIKNSQIMITPGSISEGFSCSDFKYALITDKEIFGVHKRTSQKKRKKF
KNGRKIESFLELSVGDYVVHEGHGVGRYAGIEQLKVDGIKKDYIKIIYANSDSLFVPTNQ
MDKVQKYIGQNVENVKLNKLGNNEWTKAKNKVKKSIEDMTKELIELYAKREKAKGYVYNK
DTHWQREFESLFPFEETQDQIKAINDVKSDMECDKVMDRLVCGDVGYGKTEVAIRAVFKV
CMESKQVAFLVPTTILAQQHFNTFQKRFEDFPIRVEVLSRFKTPKQQKQILEDIKKGLVD
VVIGTHRIISKDIEFKQLGLVVIDEEQRFGVKHKEKLKKLKASVDVLTLSATPIPRTLHM
SLSGIRDMSLIEEPPQERHPVLTYVVESKESIIADAIEREISRGGQVFFVYNRVEGIERI
ATLIKKLVPSARVALGHGKMSVRNLEKIMVEFLEEEYDVLVCTTIIETGMDIQNANTIII
YDADKMGLSQLYQLRGRVGRSSRQGYSYFMYEKNKMLSEVAEKRLKAIKEFTEFGSGFKI
AMRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNESIRKVKGEEVVEQIDTEVDVNVNA
YIPDEYIEDERTKIEIYKKIAAIENKKDKEDIEEEIEDRFSDIPTPLRTLIMIAYIKALG
KQLKVESVKHLKDTVYLKPYYKFKPKEKNHYKLVTEIANVLEKMI
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatatcttcacatatccattgaatgattctttggcatttaataccttattagaa
atgataaataataagaggtctcctcttttgataaatggactaataccttctcaaagaact
catatgagctatagtattataaataaattaaatagacaggccataataataactcatagt
gatcttgaagctaagaagatatatgaagatttgagtttttatttaggagataaagcagta
tatttaccatttgaagaaatactgttttattttttagatgcaaaggatagaaaagaagag
tctaagaggatgaaagttttattaaagcttataaaagaagaaaacatagtgataatatgt
tcaatagaggcagtgcttaaaaaatacataccaaaagatgtatttaagaagaatatattg
aaatacactatggatgatactataaaaatagatgaattatcatcaaagcttgtagggctt
gggtatgaaagagttaataaggttgagggagtaggacagtttagtataaggggcggaata
atagatatatattgtgcaaatacagactatcctgtaagagtagaattattcgatgaagaa
atagattctatgagaatgtttgatataatatctcaaaaatcaatagagaatataagagag
tttgagataataccatcaagagagattttatatccagataatatagaaaaaactctagat
aatcttcaaaatgaaataaaagatgatactagtgatgatgttcactctaacatattaaag
ataaaagaccttatgtactttgaaggtcttgaaaattatatagattatatgtatgaagat
gaagacaaaagtatattctcttatctaaaaaaagatgcactaataatttttaatgaacct
gagagaataaaagaaaaatctcaaaattattataatgaatttgagtcaaattacaaggtt
aatttagaaagacatactgtgctaccatctcagataaatttaataaatagatttgaggag
ttggattattttgtaaaggataggtttataatacaaaatagcatactatctaaacaagta
gaggaatttaagccaaatagtatagttacttttaattcgagggaaataacagtatttaat
tcaaaaatggacttatttatagatgaaataaacaatctaaaaaagcaaggatacaagata
ctgatagtacctggttctttagaaaagtctagaaaaatatacgatgaattactagaatta
ggagttgaagttatattttcgaaagaaaaagatgctcaaattaaaaattctcaaataatg
ataactccaggaagtatatcagaaggtttctcatgcagtgattttaaatatgctctaata
actgacaaagaaatatttggagttcacaaaagaacatctcaaaagaaaagaaagaaattt
aaaaatggaagaaaaatagagagtttcttagaacttagtgttggggattatgtagtacat
gagggccatggagtcggaagatatgctggaattgaacaattaaaggtagatggaatcaaa
aaagactacataaaaataatttatgcaaactcagatagtttgttcgttccaactaatcaa
atggataaggttcaaaagtatataggccaaaatgttgagaatgtaaaacttaataagctt
ggaaataatgaatggacaaaagcaaagaacaaagtaaaaaaatcaatagaagatatgaca
aaagagctaatagagctttatgcaaaaagggaaaaagcaaaaggatatgtttacaataag
gatactcattggcaaagagagtttgaatctttattcccatttgaagaaactcaggatcag
ataaaggcaataaacgatgttaaatctgatatggaatgcgataaagtaatggatagactg
gtatgcggagatgtaggatatggtaagacagaggtagcaataagagccgtatttaaagtt
tgtatggaatcaaagcaggtagcattcttagtaccaactacaatactagctcaacagcat
tttaatacattccaaaaaagatttgaagattttcctataagagtagaggttttaagtaga
tttaaaactccaaagcaacaaaaacaaatacttgaagatatcaaaaaaggacttgtagat
gttgtaattggaactcatagaataatatctaaagatattgaatttaagcaactaggactt
gtagtaatagatgaagagcaacgatttggagttaagcataaagaaaagctaaaaaaatta
aaagcatcagtagatgtattaactctttctgcaacccctataccgagaactcttcatatg
tcgcttagtggtataagagatatgtctttaatagaggagcctcctcaagaaagacatcct
gttcttacttatgttgtagaatctaaagaaagtattatagcagatgcaatagagagagaa
atatcaagaggcggacaggtattttttgtttacaatagagttgagggtattgagagaata
gctacacttataaaaaaactagtaccatctgcaagggttgctcttggccatggaaagatg
agtgttagaaatctagaaaagataatggtagaatttcttgaagaagaatacgacgtatta
gtttgtactacaataatagaaactggaatggacatccaaaatgcaaatacaataataata
tatgatgcagacaagatgggattatcacagctttaccagttaagaggaagagttggaaga
tcatcaagacaaggctactcttattttatgtatgaaaaaaataagatgctaagtgaagta
gcagaaaagagacttaaagctataaaggaattcactgaatttggttcaggatttaaaata
gctatgagagatcttgaaataagaggagcaggaaacatactgggatctcaacagcacggt
catatggctgtaataggatatgatctttatgtaaaaatgctaaatgaatctataagaaaa
gtaaaaggcgaagaagtagtcgaacaaatagatacagaagtagatgtaaatgttaatgct
tatatacctgatgagtatatagaagatgagagaactaagattgagatatacaaaaaaata
gcagctatagaaaacaagaaagataaagaggatatagaggaagaaatagaagatagattc
tctgatatacctacgcctcttagaactctaataatgatagcttatattaaagcactcgga
aagcagctaaaggtagaatctgtaaaacacttaaaagatacagtgtatttaaaaccgtat
tacaaatttaaaccaaaggaaaaaaatcattacaaattggttacagaaattgcgaacgtt
ttggaaaagatgatataa
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