Thermotoga sp. Cell2: CELL2_02485
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Entry
CELL2_02485 CDS
T03495
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
thz
Thermotoga sp. Cell2
Pathway
thz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CELL2_02485 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thz03021
]
CELL2_02485 (rpoB)
03400 DNA repair and recombination proteins [BR:
thz03400
]
CELL2_02485 (rpoB)
Enzymes [BR:
thz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CELL2_02485 (rpoB)
Transcription machinery [BR:
thz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CELL2_02485 (rpoB)
DNA repair and recombination proteins [BR:
thz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CELL2_02485 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF7269
Motif
Other DBs
NCBI-ProteinID:
AIY87827
LinkDB
All DBs
Position
complement(462739..466530)
Genome browser
AA seq
1263 aa
AA seq
DB search
MKEISCGRRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEEGLLEVLKKFSPIYSQATRSD
LKKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLTDMKSGEMKEEEVFLG
YIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYIDREEYGGYFLPSRGAWLEVILDP
YDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSLLLHVGSILLEDIY
DGDRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLELVSSSGEEGEEEEE
KTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERYDLSEVGRYKVNE
RLRNAYIRYLIEVEGEDPEEARKKVYNENSLVLKPLDIVLASRILFDYFERRYVNDFEID
SYELRNLIRIFKEEYLEKRKTASYDLRKLVSVFRRNYGVTSDLSVLAAIRYISNINKELP
SIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSLSKVSIQSLINIKS
IISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVFEARNVHYSQYGR
LCPIETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKVTDEVVYLRANEEEDFKIV
PATTPVDEEGNIIPERVVARVGEDIRLVPREEVDFMDVSTKQPFSVSASLIPFLEHDDAS
RALMGSNMQRQAVPLLKAEAPFVGTGMEWEAAKNSGYVTLAEHDGIVKEVDAARIVVHRT
DENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDPIADGPATDMG
ELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQARETRLGPEEITA
DIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSVF
GERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLKLVRVYVASRKTLDIGDKL
AGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGK
WFATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGY
MYMLKLVHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAE
MLTIKSDDIKGRNEAYKAILKNMNIPEPGVPESFRVLIKELKGLALDVRLYDENGNEIDI
DKY
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagatctcttgcggtaggaggacaagggtttctttcggcaagactcaggaaccc
ctaccaattccagaccttgtggagattcagaagatttcctaccgaagattcctcgaagaa
ggtttgctcgaagtcctcaaaaaattttcccccatttattcgcaggcgactcgctcagat
ttgaaaaaatcggacagaggatttgcccttgaatttgtttcaaccaggataggagaacct
gttgttgatccccttgaatgtaaagcaaagggtttaacttacagtgttccaatatacgca
acggctcgccttaccgacatgaaaagcggtgaaatgaaggaagaagaagtgttccttggc
tacattccctacatgacagatcgtggaacgttcataataaatggagcagaaagagttgtg
gtcaatcagatagtagtttctccagggctttacttctcgtctgagtacatcgacagagaa
gagtacggcggatactttcttccatctcgaggcgcatggcttgaagttatcctcgatccc
tacgatggagttctttacgcgggtcttgacggaaagaaggtcaatcttttcctctttctg
aaaacgatcggttatgaaaaggatgaggatatcctctctctttatcccacctatctggat
gccgacgatgaagacagtctcctgctccatgtgggttccattctgcttgaagacatctac
gatggtgacaggaagatcgccgaaaaatgggatatcctgaccaaagatctcgcggaaagg
attttgatgatagatgacataaatcagataaaaatagttcatccaatagctcaaaataca
tttgaaaagatgctggaattggtgtcttcctcgggcgaagagggagaggaagaagaggaa
aagacaaagatttacggtttaaacgaagttaccgttgtggacgcttatctggagatattt
agaagattgcgacccgaggaacttccaagaataaacgcggcgaagaggtatcttcacgat
ctcttctttaatccagaaagatacgatctttccgaggtgggaaggtacaaagtcaacgaa
agactaagaaacgcttacatcaggtacctcatagaggttgagggagaagatcccgaagaa
gcgaggaagaaggtttacaacgaaaattctctcgttctgaaaccactcgatatagtcctc
gcttccagaattctcttcgactactttgagagaagatacgtcaacgattttgaaatagat
tcctacgagttgagaaatttgatcagaatcttcaaggaagaatatttggaaaagagaaaa
acagcttcttacgacctcagaaagcttgtatcggtgtttcggaggaactatggagtaaca
tccgatctcagtgtccttgctgctatcaggtacatctccaacataaacaaggagcttcct
tcgatacctttcgatacaaaagaccatctcgggaacaagcgcgttagaacggtgggagaa
ctcgtccagagagagttcgagaggttgttcgcaagggcacagaaggccattcaggaaaga
ctcacactcataaactctctgagcaaggtttccattcagagtcttataaacataaaatct
atcatatcaacggtcaaccagtttttcgcgatgaaccagctttctcagttcatggatcag
gtgaaccctctgtcggaactcactcacaaaagaagggtttccgctgttggacctggtggg
ttgagaagagaatccaaagtcttcgaagcaagaaacgtgcactactcacagtacggaagg
ctgtgtcccattgagacacctgaaggtgcgaacataggattcataacatcgctggctata
tacaccaaaattgatgaatacggatttctcatgactccttacagaaaggtagtcaatgga
aaagtgacggatgaagtagtctacttgagggccaacgaagaagaagatttcaaaattgta
cctgccaccacacccgtggatgaagagggcaacataataccagagagagtagtggctcga
gtgggtgaggatatcaggcttgttcccagagaagaagtagatttcatggatgtatcaaca
aaacagcccttcagtgtctcggcttcactcattccattcctcgaacacgacgatgccagc
cgagcccttatgggttcgaacatgcagaggcaggccgtcccgcttctgaaagcggaagca
ccctttgttggaactggaatggaatgggaagcagcgaaaaattctggttatgtcactctc
gcagaacacgatggaatagtgaaagaggttgacgccgccagaatcgttgttcacagaaca
gacgagaatggaaatctcatgtacgatgataagggcaatccagtggttgatgaatacaga
cttctaaaatttgtgagatccaaccaggatacgatgataaatcaaaaacccattgtcaac
gaaggcgattttgtgaagaagggtgatcccatagccgacggtccggcaaccgacatggga
gaactggcactcggaaggaacatcctcgtcgccttcatgccatgggaaggttacaactac
gaggacgctattctcgtgagtcaggagcttcttgaagaagacgttttcacgtcgatccac
atagaagtttatgaaactcaagcaagagaaacgaggctcggtcctgaagagatcaccgct
gatataccgaacgtgagcaaagaactcctgaaaaatctcgacgagaacggaatcatcaga
gttggagcgtacgttgtgagtgactatggagtgggttctcaggcaatactggttggaaag
gtgacaccgaaaggtgaaggagacacaacaccagaagagaagatcatcagatctgttttt
ggtgaacgtggaagagacgtgaaggatacatctctcaggctgcctcacggggttgaggga
agagttataagggtcgatgtttacgatcaaaacgatatagcagaactgggagcgggagtt
ttgaaactcgtcagggtgtacgtcgcctcaagaaagacgctcgacatcggagacaagctc
gcgggacgccacggaaacaaaggtgttgtctcaaacatacttccaaaagaagacatgccg
ttcctacccgatggaacaccggttcagatggtactgaacccgctgggaataccctcacgt
atgaacgtcggtcagattctggaaacgcaccttggatggctcgccaaactaactggaaaa
tggtttgcaacacctgttttcgaaggggcgaaagaagacgaaattctcagaccgctctac
gaagaaaggaagaagaggggtcttcaccttggagacgacgaaaacaacccgaatggaaaa
gtggttctcagagacggaagaacgggagaacccttcgacaatcctgtggtggtcggttac
atgtacatgctgaagctcgttcatatagcaaaagaaaagattcatgcaagatccacagga
ccttactctctcattcaccagcagcctctcggaggaaagtctcacttcggtggacagagg
cttggagaaatggaggtctgggctctggaagcgtacggagctgctcatactctcgcggag
atgctcaccataaaatccgacgacataaaaggaagaaatgaagcttacaaagccatactg
aagaacatgaatatacctgaacctggtgttcccgaaagctttagggttctcatcaaagaa
cttaaaggtctcgcgctcgatgtgagactctatgatgagaacggtaacgagatagatatc
gacaagtactga
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integrated database retrieval system
