Thiomicrorhabdus immobilis: THMIRHAM_00060
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Entry
THMIRHAM_00060 CDS
T08420
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
tib
Thiomicrorhabdus immobilis
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tib03032
]
THMIRHAM_00060 (gyrB)
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_00060 (gyrB)
Enzymes [BR:
tib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
THMIRHAM_00060 (gyrB)
DNA replication proteins [BR:
tib03032
]
Prokaryotic type
DNA Topoisomerases
THMIRHAM_00060 (gyrB)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
THMIRHAM_00060 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
BCN92221
LinkDB
All DBs
Position
5722..8154
Genome browser
AA seq
810 aa
AA seq
DB search
MSEETQYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNGIDEALAGHCDK
VVVTIHTDGSVSVSDNGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSEKLDLIIKREGHIWKQSYTHGVPDAPLASVGETDQTGTEIRFLPSKETFTN
VTEFSFDYLLKRLRELSFLNSGVHIELVDKRDDRHEVFQFEGGIKAFVDYINTNKPVIHD
NAFYFSTVKDDITVEVAMQWSESYQESIFCFTNNIPQRDGGTHLSGFRAALTRTLNSYAE
SEGLNKKYKMNVSGDDAREGLAAVISVKVPDPKFSSQTKDKLVSSEVKSAVETAMNEKLA
EFLLENPKDAQSVFAKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS
ELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASAEVGTLITALGCGI
GHDEYNIDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQYPELVEKGYIYIAQPPLYKVK
KGKQETYLKDDGELESYLLQNAIDGSELVTEEGAPSIKGLALETLSKSYFKTKHTIDRLS
RRYNSVFLNMLVDNPEINNDVLNDLDALESWIEGILPALKASGEINKVDYNLTAEPATEL
DSKGKFQIRLQQREHGTLSMQVFDAEFFASKDYAQIVDLGKSLQGLLSNSAYIQRGEKKQ
SISTFSEAVDWLFAEAKRGQNIQRYKGLGEMNPEQLWETTMNAEARRLLQVTVRDAMIAD
QVFTTLMGDEVEPRRDFIESNALQVENLDI
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaaacgcaatacgattcctcctccatcaaggtattaaaaggccttgatgcg
gtccgtaaacgtcctggaatgtacattggtgataccgatgatggttcaggtctacaccac
atggtatttgaggttgttgataacggtatcgatgaagccttagcaggtcactgtgacaaa
gttgtggtcaccatccataccgatggttctgtctctgtaagcgataacggtcgtggtatt
ccggttggcattcacccagaagaaggggtttctgccgctgaagtcattatgacggttttg
cacgctggtggtaaatttgatgataactcgtacaaggtatccggtggtcttcacggggta
ggtgtttcggtggtaaacgccttatctgaaaagctcgacttgatcatcaaacgtgaaggc
catatttggaagcagtcttacacgcatggtgtgccagatgctccacttgcatcggtaggt
gaaacagaccagactggaacagaaatccgtttcctaccgagtaaagagacctttaccaat
gtgaccgaattcagctttgattacctgttgaagcgtctacgagaactctctttcttaaac
tctggtgtacacatcgagttagtggataagcgtgatgaccgtcatgaagtcttccagttt
gaaggtggtatcaaagcgtttgttgactatatcaataccaacaagccggttattcacgac
aacgcattctacttctcaaccgttaaagacgatattaccgttgaagtggcgatgcaatgg
tcagaatcttaccaagagtcgattttctgttttaccaataacattcctcagcgtgatggt
ggtactcacctttccggttttagagcggcattgacccgtactttgaacagttatgcggaa
tcggaaggcttaaacaaaaaatataagatgaacgtttccggtgacgatgctcgtgaaggt
cttgccgcggttatctcggtaaaagtgccggatcctaagttctcatctcagactaaagac
aaactggtttcttcagaggtgaagtcggcggttgaaaccgcaatgaacgaaaagcttgct
gaattcttgctagaaaatccaaaagacgcgcaatcggtattcgctaagattgtcgatgca
gcacgagcacgtgaagccgcgcgtaaagcccgtgaaatgacacgtcgtaaaggcgctttg
gatattgccggtctaccaggtaaactggctgactgccaagaaaaagaccctgctctttct
gaactgtacttggtggagggtgactccgcgggtggttcagccaaacaaggccgtgaccgc
cgtactcaagcaattttgccgcttaaaggtaaaatccttaacgttgaaaaagcccgtttt
gacaagatgctggcttctgccgaggtaggcaccttaatcaccgctttaggctgtggtatt
gggcatgatgagtacaatatcgacaaattacgttatcaccgcatcattatcatgacggat
gccgacgtggatggatcccacatccgcacgctactgctaacgttcttctaccgtcagtac
ccagagttggttgaaaaaggttacatctacattgcccagccaccactctataaagtgaaa
aaaggtaagcaagaaacctacttgaaagatgatggcgaacttgaaagttacctacttcag
aatgccattgacggttctgaactggttaccgaagaaggtgcgccaagcattaaggggcta
gcgttagaaacgctctctaagagctacttcaagaccaaacacacaatcgatcgtttatct
cgtcgttataactcggttttcttgaatatgctggtggacaatccggaaatcaataacgat
gtcttaaatgacttagatgcgctagaaagttggattgaaggtattttaccggccttaaaa
gccagtggcgaaatcaacaaagttgattacaacctgacggcggaaccggcaacggaatta
gacagtaaaggcaagttccaaattcgtctacaacagcgtgaacatggaactttaagcatg
caagtatttgatgccgagttctttgcctctaaagactacgcacaaatcgtagacttaggt
aaatcattacaaggcctactttctaatagtgcttatattcaacgaggcgagaagaaacag
tctatttctacctttagcgaagcggttgattggttatttgccgaagccaaacgtggtcaa
aacatccaacgttataaaggtttgggggagatgaacccagagcagctttgggaaaccacc
atgaacgcagaagcacgccgtttacttcaagtgaccgtacgtgatgccatgattgccgac
caagtcttcaccaccctaatgggagatgaagttgagccgcgtcgtgatttcattgagtcg
aatgcattacaagtagaaaacttagacatctaa
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