Thiomicrorhabdus immobilis: THMIRHAM_00180
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Entry
THMIRHAM_00180 CDS
T08420
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03030
DNA replication
tib03410
Base excision repair
tib03420
Nucleotide excision repair
tib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THMIRHAM_00180 (polA)
03410 Base excision repair
THMIRHAM_00180 (polA)
03420 Nucleotide excision repair
THMIRHAM_00180 (polA)
03440 Homologous recombination
THMIRHAM_00180 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tib03032
]
THMIRHAM_00180 (polA)
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_00180 (polA)
Enzymes [BR:
tib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THMIRHAM_00180 (polA)
DNA replication proteins [BR:
tib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THMIRHAM_00180 (polA)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
THMIRHAM_00180 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THMIRHAM_00180 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
AROS
HHH_2
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
BCN92233
LinkDB
All DBs
Position
20153..22981
Genome browser
AA seq
942 aa
AA seq
DB search
MTDSNSQISFNADSPFILVDGSSYLFRAFHAMPPLTNGKGQATGAIFGVINMLGKLIEQY
QPEKMAVIFDAKGKTFRHELYDEYKAHRPPMPDELRTQIEPIHEIVKALGLPLLVIDGVE
ADDVMGTFAHQATEAQHDTLISTGDKDLAQLVNEHVTLINTMNDTLSTPESVLEKFGVRP
EQIIDYLALVGDSADNIPGIPKCGPKTAVKWLNSFGNIDNLIANAPMIGGKIGENLRNNL
DQLVLSRELTTIKVDCDLPVSLDDIQRKQPDLERLQELFKEYDLRNWLNQVMAGHAPFSK
STGAKAHSQTVQKKTSNSSEEQSPITPQSTQNAQPSNYETVFTEAEFAKWMELIQQAELF
AIDTETTSLNTMQAKIVGICLAVKDPASTGNLACYIPLMHDYEGAPQQLDIDMVLNQLKP
ILENPNVAKCGQNLKYDWHVLQNHGIDLKGMQYDTMLESYSLNSIATRHNMDDLALKYLN
HRTTHFEEIAGKGKKQLTFNQIEIETAAHYAAEDADITLQLHQTLWQQLEAEPPLKKVFT
DIEMPLMPVLAHMERNGVLLDTDMLAIQSEEISKKLTELEQKAHLIAGEVFNLNSSKQLQ
TILFENLELPIIKKTPKGQPSTAEPVLAELADQGHEMPILILEYRSLAKLKSTYTDSLPK
QVDPNTGRVHTSYMQAVASTGRLSSTEPNLQNIPIRSAEGRRIRQAFITRPGYKMVAADY
SQIELRIMAHLSGDAGLLKAFSEGKDIHQATAAEIFGVPLEDVTTEQRRSAKAVNFGLIY
GMSAFGLAKQLNVGRNLAQEYIDLYFSRYPGVLHYMQDTKEQAKSTGYVETLLGRRLYLP
DINARNGQLRQYAERTAINAPMQGTAADIIKTAMIQIEKWLQTCGFDIQMLMQVHDELVF
EVAEDQLDAVKPEIKRLMESALELKVPLIVEIGEGNNWDEAH
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattccaattcgcaaatttcttttaacgccgacagcccttttattttagtggac
ggttcatcctatttatttagggcttttcacgctatgccacctcttaccaatggtaaaggc
caggcaactggggcgatttttggcgttatcaatatgctgggtaaactgattgagcagtac
cagcctgagaaaatggcggttatttttgatgccaaaggcaaaacctttcgccatgagttg
tatgatgaatataaggcgcaccgcccaccaatgccggatgaactcagaacacaaatcgaa
ccgattcatgaaattgtcaaagccttggggttacccttattggtgattgatggtgttgag
gccgacgatgtgatgggaacctttgcccaccaagctaccgaagcccaacacgacaccttg
atctcaacgggtgataaagatttagcccaactggtgaatgaacatgtcaccctaatcaac
accatgaacgacaccctttccactcctgaaagcgtattggaaaagtttggggttcgtcct
gaacagatcatcgactacttggctttggtcggcgatagtgcggataacattccaggaatt
cccaaatgtggcccgaaaaccgcggttaaatggctgaactcgtttggcaatatcgataat
ctaatcgccaacgccccgatgattggggggaaaattggtgagaacctgcgcaataaccta
gaccaacttgtactttctagggaactgactaccattaaagtagactgcgatttgcctgtt
agcctagacgatattcaaagaaaacaacccgatttagaacgtttacaagagctcttcaaa
gagtacgatttacgcaactggttaaaccaggtgatggctgggcacgcgcctttttcaaag
tccacaggcgcgaaagcccatagccaaacagtgcagaagaaaaccagcaatagcagtgaa
gagcaaagccctataacaccgcaatccactcaaaatgcgcaaccatcaaattatgaaaca
gtatttaccgaagcggaatttgcaaaatggatggagcttatccagcaagcggaactgttc
gccatcgataccgaaaccacctcgttgaataccatgcaagcaaaaatcgtagggatttgt
ttagcggttaaagacccagcaagcaccggtaatctagcctgttatatcccgttgatgcat
gattatgaaggcgctccacagcaacttgatatcgacatggttttaaatcaactaaaaccc
atcctagaaaacccaaatgtcgctaaatgcggtcaaaatttaaaatatgactggcatgtg
ttacagaaccacggcatcgacttaaaaggcatgcagtatgacaccatgctcgaatcctac
tcgttgaacagcattgctacccgtcacaatatggatgatttggcactcaaatacctcaac
catcgcaccacccattttgaagagattgccggtaaaggtaaaaaacagctgacctttaac
caaatcgagattgaaaccgcggcccattatgcggctgaagatgccgacatcaccttgcaa
ctacatcaaacactttggcaacaattagaagcagaaccaccacttaaaaaggtatttacc
gacatagaaatgcctttaatgccagttttggctcatatggaacgcaacggtgtattgttg
gataccgacatgctggcgattcaaagtgaagagatcagtaaaaaactcactgaacttgaa
caaaaagcgcatttaatcgccggagaagtctttaacctcaactcttctaagcaattacaa
accattttgtttgaaaatctagagctacccatcatcaagaaaacccccaaaggccaacca
tctaccgccgagccggtattggccgaattagccgatcaaggccatgagatgcctatcctg
attctagaataccgcagtttggccaaactgaagtcgacctacaccgattccctgcccaaa
caggtagacccaaatacgggtcgtgttcatacctcgtatatgcaagcggtagcatcaacc
ggacgtttatcctcaaccgagcctaatttacagaacattccaatccgttctgcagaaggt
cgtcgaattcgtcaggcttttataaccaggcctggttataaaatggtggcggcggattat
tcgcaaattgaactgagaattatggcgcacttatcgggtgatgccggacttttgaaggcc
ttttctgaaggcaaggacatccaccaggctacagccgctgaaatttttggtgttccgtta
gaagatgtcaccactgaacagcgtcgcagcgccaaagcggtgaactttggtttgatttac
ggcatgtcggcgtttggtttagccaaacagttgaatgtagggcgcaatctcgctcaagag
tatatagatttgtatttctcacgttatcctggcgtattgcattatatgcaagacaccaaa
gaacaggctaaatcgacaggttatgttgaaaccttattaggtcgtagactgtatttgccg
gacatcaacgcccgcaacggccagttacgccaatacgctgaacgtaccgctatcaatgcc
cctatgcagggaacggcagccgatatcattaaaaccgcgatgatacaaatcgaaaaatgg
ttacaaacctgtggttttgatatccaaatgctcatgcaagtgcacgatgaattggtgttt
gaagtcgctgaagaccaattagatgccgtaaaacccgaaattaaacgcttaatggaatcg
gctcttgaattgaaagtgccgttgattgttgaaatcggtgagggcaataactgggatgaa
gcccactaa
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