Thiomicrorhabdus immobilis: THMIRHAM_00290
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Entry
THMIRHAM_00290 CDS
T08420
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAM_00290 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tib03019
]
THMIRHAM_00290 (recQ)
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_00290 (recQ)
Enzymes [BR:
tib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THMIRHAM_00290 (recQ)
Messenger RNA biogenesis [BR:
tib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THMIRHAM_00290 (recQ)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THMIRHAM_00290 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HEM4
Helicase_Sgs1
Anp1
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
BCN92244
UniProt:
A0ABM7MA79
LinkDB
All DBs
Position
complement(33884..35686)
Genome browser
AA seq
600 aa
AA seq
DB search
MSHSSALNVLQTVYGYDSFRSQQQEIIEDLISGQDCFVLMPTGGGKSLCYQIPALLRQGT
AIVVSPLIALMQDQVSALQANGVSAAYYNSSLDAQSAEAVLAQLHSGQLDLLYVSPERLL
NQSFIQRLQSLPIALFAIDEAHCISQWGHDFRPEYRQMGALREWFSAVPFIALTATADRA
TRQDIIDKLQFHQPKVHISSFDRPNIRYRVLEKSNPMKQLLAFLETQPNVSGIIYALSRK
RVEEVAEKLKEEGFNAKAYHAGLPSEIRQKVHQQFIRDEVDIVVATVAFGMGIDKPNVRF
VVHYDLPKNIEGYYQETGRAGRDGLPSEALLLFGMQDVATAKHFVENVSDEEQRRLENFK
LSSMVDFAEAQTCRRNVLLNYFAEPSHKACGNCDICLDPPTLFDGKEAAQKALSCIYRMQ
QGFGAKQVIDVLRGMDNERIRNLNHHQLSTYGIGKEYSAQEWSSILRQLIHLGYIYQDIQ
NYSVLKLTELSGDVLKGKTEIQLAFPKKTLNKVTRPGKRSSSKETLLDKDRACFEELRVL
RKEIAESEDKPAYQIFGDATLVEMAQKRPKTDAELLAISGVGEKKLENYGFEFLAALRAM
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtgagccactcttctgcattgaatgtattacaaaccgtttatggttatgactcttttaga
agccagcaacaggagattatcgaggatttaatctccggccaagactgtttcgttttaatg
ccgaccggaggcggaaaatcgctgtgttatcaaattcctgctttacttaggcagggtacg
gcgattgtggtttcacctttgattgccttgatgcaagatcaggtttcggctttacaggcc
aatggggtttcagccgcttattacaattcgagcttagatgcgcagtcggcagaagcggtg
ttggcgcaattgcactccgggcagttggatttactgtatgtctcccctgaacgacttttg
aaccagagttttatccagcgtttgcaaagtctaccgattgcgttgtttgccatagatgaa
gcccattgcatctcccagtggggtcacgactttagaccggaatatcgtcaaatgggcgct
ttaagagagtggttttctgcggtaccttttatcgcacttaccgccaccgccgacagagcg
acccgccaagacatcatcgacaagttgcaatttcaccaacctaaagtacatatcagcagt
tttgaccgtccgaatatccgttatcgtgtactggaaaaaagtaaccctatgaaacagttg
ttggcttttttggaaactcagccaaatgtcagtgggattatctatgcgttaagtcgtaaa
cgggtagaagaggtggccgaaaaactcaaagaggaggggtttaacgccaaagcttatcac
gcagggttaccttccgaaatcaggcagaaagtgcatcaacagtttatccgtgacgaagtc
gatattgtggtggccaccgtggcgtttggtatgggcatagataaacccaatgtgcgtttt
gtggtgcattatgacctaccaaagaacattgaaggttattaccaggaaaccggccgagca
gggcgcgatggattgccttctgaagccttgttgctattcggtatgcaagatgtcgccacc
gccaaacattttgtagaaaacgtaagtgatgaagagcaacgtcgtttagagaatttcaag
ttatcgagtatggtcgattttgccgaggcgcagacctgtcgacgtaatgtgttactgaac
tattttgccgaacccagccataaagcgtgcggtaattgcgatatctgtttggatcccccc
actttatttgatggtaaagaggcggctcaaaaggccttgtcttgcatttacagaatgcag
caggggttcggggctaaacaggtcattgatgtattgcgtggtatggataatgagcgcatt
cgaaatttaaaccatcatcaactgagtacttacggaatcggcaaagagtattcagcgcaa
gaatggtcgagtattttgcgtcaattgatccatttagggtatatctatcaagatatccaa
aactattcggtattgaagctaacagagctttctggtgatgttttaaaaggtaagacagag
attcaattggcgtttcctaaaaagacactgaataaagtgaccaggcctggtaaacgtagc
agttcaaaagagactctattggataaagatagagcttgttttgaagaacttagagttcta
cgtaaagagattgccgaaagtgaagataaacccgcttatcagatttttggtgatgccacc
ctggttgaaatggcacaaaaaagacctaaaaccgatgccgaattattggcgattagcggc
gtgggtgagaagaaattggaaaactacggttttgagtttttagcggctttgagagccatg
taa
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