Thiomicrorhabdus immobilis: THMIRHAM_01580
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Entry
THMIRHAM_01580 CDS
T08420
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAM_01580 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tib03019
]
THMIRHAM_01580 (deaD)
03009 Ribosome biogenesis [BR:
tib03009
]
THMIRHAM_01580 (deaD)
Enzymes [BR:
tib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THMIRHAM_01580 (deaD)
Messenger RNA biogenesis [BR:
tib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THMIRHAM_01580 (deaD)
Ribosome biogenesis [BR:
tib03009
]
Prokaryotic type
rRNA helicases
THMIRHAM_01580 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Flavi_DEAD
DUF6702
Motif
Other DBs
NCBI-ProteinID:
BCN92373
UniProt:
A0ABM7MAL8
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All DBs
Position
complement(199793..201592)
Genome browser
AA seq
599 aa
AA seq
DB search
MTVDVTFKDLNLTPEVLKAITDIGYETPSPIQAQAIPALMTGNDILGMAQTGTGKTAAFA
LPALSQADIKQKNPQILVLAPTRELAIQVAEAFQGFAHHMKGFHVLPIYGGSDYGTQIRA
LNRGVHVVVGTPGRVMDHIRKGTLKLDTLKLLVLDEADEMLRMGFIDDVEWILQQTPESR
QIALFSATMPKEVHRIATNYLNNPTEVIIKQQTATATTIEQKYLLVSGGHKLDALTRILE
AEEEIDGSIIFVRTKTATVDLAERLEARGYAAAALNGDIAQNQRERIVDQLKKGKLDILV
ATDVVARGLDVPRISHVFNYDIPQDNESYVHRIGRTGRAGRSGTAVLFVTPRERRLLSSI
ERTTKSKIPEMHLPSTQDINDSRVEKFKSRIIEATQLEDTAFYQEMIEQIETEKNIPAVE
IAAGLARLLQGDIPFFMSDKPIREPRAERNAGDDRGRSDRNDRGNRGDRGGRGERPERKP
RRERSATPDEGMTRFRIEVGNQHGVRPGNIVGCIANEAGLDSEFIRQLNIEDTYSTVDLP
SDMPKAAREDLSKAWVCGQQLKIREVSGGSASEPRKRLTRNKAAPSKDKGKPRRAPKRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgactgttgatgtaacattcaaagatttaaacttaacccctgaagtacttaaagccatt
actgacattggctatgaaacaccttcaccaatccaggcacaagcgattcctgcgttaatg
acaggtaatgacattctaggtatggcgcaaaccggtacaggtaagactgccgctttcgct
ctacctgcattatcgcaagccgacatcaaacaaaaaaacccgcaaatccttgttttggcg
cctactcgtgagttagcgattcaggttgctgaagcgtttcaaggttttgcacaccatatg
aaaggttttcacgtccttcctatttacggtggttcagattatggcacacaaatccgtgcc
ttaaaccgtggtgtacacgttgtggtgggaactcctggccgcgttatggaccacatccgt
aaaggaactttaaaacttgataccttaaagctacttgttttggatgaagccgatgaaatg
ttacgcatgggattcatcgacgatgttgagtggattcttcagcaaacgcctgaaagccgt
caaattgcacttttctcggcaactatgcctaaagaagttcaccgcattgcgaccaattac
ctaaataacccaactgaggttattatcaaacaacagactgcaaccgcaacgacgattgaa
caaaaatatcttttggtaagcggtggccacaagctggatgccttaacccgtatcttagaa
gcggaagaagagattgatggttcaatcatctttgtacgtaccaaaacagcgactgttgac
ctggcagaacgcctagaagcacgtggttatgctgcggccgctttgaatggtgatattgcc
cagaaccaacgtgaacgtatcgttgaccaacttaagaaaggcaaacttgatatcttagtc
gctaccgatgtggttgcccgtggtttagatgtgccgcgtatcagccacgtgttcaactat
gatattccgcaagataatgaatcttatgttcaccgtatcggtcgtacaggtcgtgcgggt
cgttcaggaacagcggtattattcgttaccccacgtgagcgtcgtttattaagctcaatt
gagcgcaccacgaaaagcaagattccagaaatgcacttgccttcgacacaagacatcaat
gacagccgtgtagaaaaattcaagtctcgcattattgaagcaactcaactagaagacacc
gctttctatcaagagatgattgaacagattgaaaccgagaagaacattcctgcagttgaa
attgcggctggtttagcgcgtctgttacaaggcgacattccattctttatgtcagacaaa
ccgatccgtgaaccacgtgcggaacgtaacgccggtgatgatagaggtcgtagcgacaga
aatgaccgcggtaaccgtggcgatcgcggggggcgtggcgaacgtccagagcgtaaacca
cgtcgtgaacgttcggcaacacctgatgaaggtatgacacgtttccgcattgaagtgggg
aatcaacacggagttcgtccaggcaacatcgtcggctgtatcgccaacgaagccggctta
gacagcgaatttatccgtcagttaaatattgaagatacttacagcacggttgatttgcca
tctgatatgccaaaagcggctagagaagatttgagcaaagcttgggtatgtggacagcaa
cttaaaattcgtgaagtttccggtggtagtgcaagtgaaccgcgtaagcgtttaactcgc
aataaagccgcaccgagcaaagacaaaggcaagccgcgtcgtgcgccaaaacgtagctaa
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