KEGG T08420: THMIRHAM

Thiomicrorhabdus immobilis: THMIRHAM_02220

Entry

THMIRHAM_02220    CDS       T08420

Symbol

trmA

Name

(GenBank) tRNA/tmRNA (uracil-C(5))-methyltransferase

K00557

tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]

Organism

tib Thiomicrorhabdus immobilis

Brite

KEGG Orthology (KO) [BR:tib00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tib03016]
    THMIRHAM_02220 (trmA)
Enzymes [BR:tib01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.35  tRNA (uracil54-C5)-methyltransferase
     THMIRHAM_02220 (trmA)
Transfer RNA biogenesis [BR:tib03016]
Prokaryotic type
  tRNA modification factors
   Methyltransferases
    THMIRHAM_02220 (trmA)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr MTS Methyltransf_25 Methyltransf_31 Methyltransf_15 Methyltransf_4 Cons_hypoth95 TRM5-TYW2_MTfase Methyltransf_11 Methyltransf_12 PrmA Thg1 DREV TPMT

Other DBs

NCBI-ProteinID:

BCN92437

LinkDB

Position

273207..274304

AA seq 365 aa
MLCQVYPEQYESQLADKVTRLNQLLPPSAQDKPQTVFASSPEHYRARAEFRIWHEGDESD
YIMFNQETKEKVAIKECPMAIESIADLMPKLMAEIIRQPVLRERLFQVDFLATLSGQMLV
TLIYRKSIQDDQAWLDAAQALKTCLPITHIIGRARKQKILLDEDFVVEELQVDGKKFIYQ
QIENSFTQPNAKMAQNMLHWARKMSQDAEGDLIELYCGNGNFSIALSEHYNRVLATEISK
TSVASAQFNIAANQVDNLTVIKMAAEEISAALQGQQFNRLKDIDLNSYDFQTIFVDPPRS
GLDDLTRQMVTEFERIIYISCNPETLAIDLASIQKTHEIVETALFDQFPYTHHIESGVFL
KRKEP

NT seq 1098 nt +upstreamnt +downstreamnt
atgctctgccaagtttatcctgaacaatatgaatcgcagttggccgataaggtaactcga
ttaaaccaactgctcccgccatccgcccaagacaaaccgcaaaccgtgtttgcttctagt
ccagaacattaccgtgcgcgtgccgagtttcgtatttggcatgaaggcgatgagtcggat
tacatcatgttcaatcaggaaaccaaagagaaggtagcgattaaagagtgcccgatggcg
atagagtcgattgccgatttgatgccgaaattaatggctgaaatcatccggcaaccggtg
ttgcgtgaacgtctgtttcaggtggactttttagcgacgttgagcgggcaaatgctggtg
accttgatttaccgtaagtcaatccaagatgaccaggcctggttagatgcggcacaggct
ttgaaaacttgcttgccaattacccatattatcggccgtgcgcgtaaacagaagattcta
ttggacgaagattttgtggtggaagagctgcaggtggatggtaaaaaattcatttaccag
caaatagaaaatagctttacccaaccaaatgccaagatggcgcaaaacatgttgcattgg
gcacgtaagatgtcacaagatgcagaaggtgatttgattgaattgtattgtggaaacggt
aacttctccatcgccctaagtgaacattacaaccgtgtgttggcaacggaaatctccaaa
acctcggtggcatcggcgcaattcaatatcgccgccaaccaggtagataaccttacggtc
attaaaatggccgcagaagagattagcgcagcccttcaaggccaacaattcaatcgttta
aaagacatcgatttgaatagctatgattttcaaaccatttttgtcgatccaccgcgctct
ggtctggatgatttaacccgccagatggtgactgagttcgagcgcattatctatatctcc
tgtaacccggaaactttggcgattgatttagcctccatccagaaaacccatgagattgtc
gaaaccgctttgttcgaccagtttccgtacacccaccatattgaatcgggtgtgttttta
aagagaaaggagccgtag

DBGET integrated database retrieval system