Thiomicrorhabdus immobilis: THMIRHAM_03430
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Entry
THMIRHAM_03430 CDS
T08420
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THMIRHAM_03430 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tib03021
]
THMIRHAM_03430 (rpoC)
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_03430 (rpoC)
Enzymes [BR:
tib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THMIRHAM_03430 (rpoC)
Transcription machinery [BR:
tib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THMIRHAM_03430 (rpoC)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THMIRHAM_03430 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BCN92558
UniProt:
A0ABM7MB43
LinkDB
All DBs
Position
420826..425049
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLGFLKKQNVSSDFDAIKVSLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIRDFECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIDLATSVAHIWFLKSL
PSRIGLMLDMTLKEIEAVLYFEAFMVVDPGLTPLEPWQLLTEEEYLDAMDEHGDEFEAQM
GAEAIKKMLQAIDLEGEAERLRVEIDSTNSETKQKKISKRLKLIESFVQSGNKPEWMILD
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLMAPDIIVRNEKRMLQ
ESVDSLLDNGRRGRAVTGTNKRQLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPS
LRLHQCGLPKKMALELFKPFIFSKLQKRGVAPTIKAAKKMVEQGLPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAINLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMSTNNLLSPANGDPIIVPSQDVVLGLYYITRERINSIGEGKAFANWQEVQRAIDAK
TVHLHTKIKLRIVETVIDDEGVESVSSRIVDTTAGRALLSRILPKGLSYDLLNLNLTKKN
ISTVLNTCYRVLGPKETVIFADQLMYAGFKWSTLAGLSFCSDDMLIPDSKAGIIERAEAQ
VEEIQGQFSQGLVTEGERYNKVVDIWSHTNELVTKSMMEELQFETVTDAEGNEVQQTSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTDSGIRMTAHVEGGDIIESLKDRVL
GRITNQDVVSQSGELIVAKGQLIDEKVANQIDESGVDHVDVRSPMTCETKFGICQQCYGR
DLARGHLVNMGEAVGVMAAQSIGEPGTQLTMRTFHIGGTASGSAAQSQIEVKHAGKIKWD
NLKAIKNSDNQIIVTSRSGEVSVIDEAGREQERYKIAYGTTLNVSDGGSITAGDILAQWD
PHTHPVITEAAGSIAFGNFEGTVEERVDELTGLTTRVVKDAKERMSSVKETRPYIALVDE
AGEAICFTGTQTPALYYLPENSIVVVQEGSKVGAGDVLARIPQASSKNKDITGGLPRVAD
LFEARQPKEPSIMAEVSGVVGFGKETKGKQRLVITQDSGEQYEALIPKWRTVSVFEGERV
ERGDVVVDGNPNPHDILRLLGIEKLAEYIVDEVQDVYRLQGVKINDKHIETIVRQMLRKV
EVKSSGDTGLIKGEQTEYAKVLELNEKAREEGKVEASYERVLLGITKASLATESFISAAS
FQETTRVLTEAAVSGKRDTLVGLKENVIVGRLIPAGTGFAYHQARKAASEKSQVELQAFM
GATESGDVQQPEESVVETVNEGEGVEA
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttattaggatttctaaaaaaacaaaacgtatcaagtgactttgatgcgatt
aaggtatcacttgcttcaccagagaaaatccgttcttggtcttatggcgaagtaaaaaag
cctgagacaattaactatcgtacgttcaagccagaacgtgacggtcttttctgtgcaaaa
atctttgggccgattcgtgattttgaatgtttgtgtggtaaatacaagcgtcttaagcac
cgtggtgtaatttgtgagaagtgtggtgttgaggtaactcaatcaaaagtacgtcgtgag
cgtatgggtcatattgatcttgccacttctgttgcacatatctggttcttgaagtctcta
ccatcacgtatcggtttgatgttggatatgacattaaaagagattgaagcggttctttac
tttgaagcgttcatggttgttgatccaggcttaactccacttgaaccttggcagttgctg
actgaagaagaataccttgatgctatggatgagcacggtgacgagtttgaagctcaaatg
ggtgctgaagcaatcaagaaaatgcttcaggctatcgatttggaaggtgaagcagagcgt
ctacgtgttgaaatcgatagtactaattctgaaacaaagcagaagaagatttctaagcgt
cttaaattaattgagtcttttgttcagtcaggtaataagcctgaatggatgattttagat
gtacttcctgtattaccgcctgagttacgtcctttagtacctcttgacggtggtcgtttt
gcaacttcggacttaaacgatttataccgtcgtgtaatcaaccgtaacaaccgtttaaaa
cgtctattagatttgatggctccagatatcatcgtacgtaacgaaaaacgtatgttgcaa
gagtcagtggactctctattggataacggtcgtcgtggacgtgctgtaactgggacgaac
aagcgtcagcttaaatctcttgcagacatgattaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattctggtcgttctgtaatcgtagttggtccatct
ctacgtctgcatcagtgtggtcttcctaagaagatggctcttgaactgttcaagccgttt
atcttcagcaagcttcagaagcgtggtgttgctccaacaatcaaagcggctaagaaaatg
gtagagcaaggacttccagaggtgtgggatgttcttgatgaagtaatccgtgagcatccg
gttctgttgaaccgtgctccaacacttcaccgtttaggtatccaggcgtttgaaccggta
ttgatcgaaggtaaagcgatcaacctacacccgttagtatgttctgcattcaacgccgac
ttcgatggtgaccaaatggcggtacacgtaccattgtcattagaagctcagcttgaagca
cgtacattgatgatgtctacaaacaacttgttatcaccagctaatggtgatcctatcatc
gttccttctcaggacgttgtattaggtttgtattacatcactcgtgagcgtatcaactct
atcggtgaaggtaaggcctttgctaactggcaagaagttcagcgtgcaattgacgctaaa
acagtgcatttacacactaagatcaaattacgtattgttgaaaccgtaattgatgatgaa
ggtgttgaaagtgtatcaagccgtattgtagatactacggctggtcgtgcgttgctttct
agaatcctgcctaaagggttaagttatgatttattgaacttaaatctaaccaagaaaaat
atcagtacggtattaaatacttgttaccgtgttttaggtcctaaagaaacggtaattttt
gctgaccaactaatgtacgctggtttcaaatggtcgacattagcaggcctatctttctgt
tcggatgatatgttgattcctgattcaaaggctggaatcatcgaacgtgcagaagctcag
gttgaagagattcaaggtcagttctctcaaggtttggtaactgaaggtgagcgctacaac
aaagttgttgatatttggtctcacaccaatgaacttgttaccaagtcgatgatggaagag
ttacagtttgaaactgttacagatgcagaaggaaacgaagttcagcaaacctcattcaac
tctgtttacatgatggccgactctggtgctcgtggatcggtagcacagatgcgtcagctt
ggtggtatgcgtggtcttatggcaaaaccagatggttctatcatcgagacaccgattaca
gcaaacttccgtgaaggtttgaacgtacttcagtacttcatctctacacacggtgcgcgt
aaaggtttggcggatacagcgcttaaaacagctaactctggttacctgacgcgtcgtcta
gttgatgttgctcaggatgtggttgtgactgaacatgattgcggtacagattctggtatt
cgtatgacagcccatgttgaaggtggtgatatcatcgagtctttgaaagatcgtgtatta
ggtcgtatcacaaatcaagatgtcgtatctcagtcaggtgaattaattgttgcgaaagga
cagttgatcgatgaaaaagttgcgaatcaaatcgatgaaagtggtgttgatcacgtagat
gttcgttctccaatgacttgtgaaactaagtttggtatctgtcagcagtgttatggtcgt
gatttggcgcgtggacacttggtgaatatgggtgaagccgttggtgttatggctgctcag
tcaatcggtgagccgggtactcagttaaccatgcgtacgttccatatcggtggtacggca
tctggttctgcagcgcaaagccaaattgaggttaagcatgctggtaagatcaagtgggat
aacctaaaagcgattaagaactctgataaccaaattatcgtcacttcacgttctggtgag
gtatcggtgattgatgaagcgggtcgtgaacaagagcgttataagattgcatacggaacc
acacttaatgtaagtgatggtggttcaattactgcaggcgatattcttgctcaatgggat
ccgcatactcacccagttatcacggaagcggctggtagcattgcattcggtaacttcgaa
ggtacggtagaagaacgtgtcgatgagttgactggtttaacaactcgtgttgttaaagat
gctaaagagcgtatgtcttcagttaaagagacacgtccttatatcgcattggttgatgag
gcgggtgaagctatttgctttaccggtactcagactccagcactttactacctaccagaa
aacagtattgttgttgttcaagaaggtagcaaggttggtgccggtgacgtattagcacgt
attccgcaagcgtcatcgaagaacaaagatattaccgggggtctacctcgagtcgctgac
ttgtttgaagcgcgtcaaccaaaagagccttcaatcatggcagaagtatctggtgtggta
ggtttcggtaaagaaacaaaaggtaagcagcgtttagtcatcactcaagatagtggtgaa
caatatgaagcacttatccctaaatggcgtacggtttcagtctttgaaggtgagcgtgtt
gagcgtggtgatgtggttgtagatggtaatccaaatccacacgacatcctacgattatta
ggtattgaaaaattagcagaatacattgttgacgaagtgcaggatgtttaccgtttacaa
ggtgtaaaaatcaacgataaacacatcgaaacaattgttcgtcaaatgctaagaaaagtt
gaagttaaatcttcaggtgatactggtttgatcaaaggtgagcaaactgagtacgctaaa
gtattagagttaaatgaaaaggctcgtgaagaaggtaaagtggaagcaagttatgaacgt
gttcttcttggtatcactaaagcttcacttgcaactgaatcatttatctcagcagcgtcc
ttccaagaaacaactcgtgtattaaccgaagctgcggtaagtggtaaacgtgataccttg
gttggtttgaaagagaacgtaattgttggtcgtctgattccagctggtacaggttttgcc
tatcaccaagcgcgaaaagcggcgagcgaaaaatcacaggttgagttgcaagcatttatg
ggtgcaactgagtctggggatgttcagcaaccagaagaatctgttgttgaaacagtaaat
gaaggtgaaggggttgaagcctaa
DBGET
integrated database retrieval system
