KEGG   Thiomicrorhabdus immobilis: THMIRHAM_05540
Entry
THMIRHAM_05540    CDS       T08420                                 
Name
(GenBank) type I restriction-modification system endonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
tib  Thiomicrorhabdus immobilis
Brite
KEGG Orthology (KO) [BR:tib00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:tib02048]
    THMIRHAM_05540
Enzymes [BR:tib01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     THMIRHAM_05540
Prokaryotic defense system [BR:tib02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   THMIRHAM_05540
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like Helicase_C PI3K_C2 AAA_11
Other DBs
NCBI-ProteinID: BCN92769
LinkDB
Position
642249..645377
AA seq 1042 aa
MAAAKNKHNEDTRVKIPSILHLTRLGYTYLSLKDQSWHTETNIFPALFKAAVTKINPELK
DEDADRLLKEISLLLDNEDLGKAFFEKLTERSNTKLIDFENFNNNSFHVVTELPCINGDE
EFRPDITLLINGLPLVFIEVKKPNNRDGIIAERERINRRFQNPKFKHFANITQFMIFSNN
MEYDDTDPEPVQGAFYASSSYNEPVFNYFREEEVLNLTALLKPLSDETELSVLKDTNYQV
IRSSPEFQTNKDPNRPTNRICTSLLSRYRLAFLLRYALVYVNEHNGLQKHIMRYPQLFAT
KAIENKLNEGVKKGIIWHTQGSGKTALTFYNVRFLTDYFQKQKVIPKFYFIVDRLDLLQQ
AQQEFTARGLIVHTINSREDFTKEIKATKVIHNDSGKPEITVVNIQKFKDDPDVVSTKDY
DVAIQRVYFMDEVHRSYNPKGSFLANLSQSDANAIKIGLTGTPLLGDDYNSRVLFGDYIH
KYYYNASIADGYTLRLIREEISTQYKIDLQKALEEAEVQVGGLDKRKAYSHPNFVEPMLD
YIVSDFESSRTTLDDSTIGGMVICDSSEQAKQMFEIFQSKYADNPQLTDPAILHTATLMA
AEPAPVSYVANQKMRNKVKNAALILHDIGSKQERKDWVDDFKAGKIDFLFVYNMLLTGFD
AKRLKKLYLGRIIRKHNLLQALTRVNRTYKSFRYGYVVDFADISKEFDATNKAYFEELQA
ELGDEMGHYSHLFKSQEEIHQDIEQIKDALFRFDIENAEIFADQVSQIQDRETVLQLKKV
LGSAKELYNLIRLQGEYDFLDHLDFNQLNKLYRETENHLHLLNLKHDLESGVDNTGLLNR
ALEDVIFKFVKIGEEELVLADQLKNTLRKTREALAGNFDQQDPTFVTLKEELQRLFKKKN
LSEVSQEEMIANIDALNKIHARVNDLNRQNDQLRQKYQGDAKYSRIHKRLQERQQTNKDI
SDSERKIFDALVSVKEDADEQVLNNSQILDNESYFKRQMMPLVLNRFYKEQQIKLNADTS
KYINQLVVAEYLKEYNTGANAW
NT seq 3129 nt   +upstreamnt  +downstreamnt
atggcggcagcaaagaataagcataacgaagacactcgcgtaaaaattccatccattttg
catctgaccagactcgggtatacctatctttcattgaaagatcagtcttggcacactgaa
actaatatatttccagcgctatttaaagccgcggttacaaaaataaacccggaattgaaa
gacgaagatgctgatcgtttattaaaagaaatctctttactcctggacaacgaagactta
ggcaaggcatttttcgagaaactgactgaacgctcaaacacaaagctaattgatttcgaa
aacttcaataacaacagctttcatgttgtgacagagttgccttgtattaacggtgatgaa
gagttccgcccagacattaccttgctcatcaacggtctaccattggtgtttattgaggtt
aaaaagcccaataacagagatggtattattgccgagcgagaacgtatcaatcgtcgtttt
caaaaccccaaattcaaacattttgccaacatcacccagttcatgattttctccaacaat
atggagtatgacgatacagatcctgagccagttcaaggtgctttttatgccagcagttca
tacaacgaacccgtgtttaactacttccgtgaagaggaagtgctcaatttaacggcattg
ctcaagcctttgtcagatgaaaccgaattatctgtcctcaaagacaccaactaccaagtc
attcgcagcagtccagaatttcaaaccaataaagaccctaaccgaccaaccaatcgcatc
tgcacatctttgttgagtcgataccgtctggcgtttttacttcgctacgcgctggtgtat
gtgaatgagcataatggtctgcaaaagcacatcatgcgttacccgcagctgtttgcaacc
aaagccattgaaaataagctgaatgaaggcgttaaaaaaggcattatttggcacacgcag
ggaagcggaaaaaccgcgttgacgttctacaacgtacgctttttaaccgactactttcaa
aagcagaaggtgatcccaaagttttactttattgttgaccgtttagaccttttacaacag
gcacagcaagagttcactgctcgtgggttgattgtgcacacgatcaactcacgcgaggac
ttcaccaaagagattaaagcgacaaaggttattcataatgactctggtaagcctgaaatt
accgttgtgaatattcaaaaatttaaagacgatccggatgttgtttccaccaaggactac
gatgttgcgattcagcgtgtttactttatggatgaagtgcaccgaagctataaccctaaa
ggtagctttctagccaacctgagtcaatcggatgcaaatgctataaaaattggtttaacc
ggtacaccattattgggtgatgactataactcacgggtgttatttggggattacatccac
aaatactattacaacgcttccattgccgacggctataccttgcgcttaattcgtgaggaa
atttccacgcaatacaaaatagatttacaaaaagccctggaagaggcagaagtgcaggta
ggtggtctcgataaacgaaaagcctactctcaccctaactttgttgaacctatgttggat
tatattgtttccgactttgaaagtagtcgaactactcttgatgattcaacaattggcggc
atggttatttgcgacagttctgaacaagccaagcagatgtttgagatatttcaaagtaaa
tatgcagacaatccacaattaactgaccctgcaatacttcatacagcaacattaatggca
gccgaacctgctcctgttagttatgtagctaaccaaaaaatgagaaataaagttaagaat
gccgccctaatattgcatgacattggctccaagcaagaacgcaaagattgggtggatgat
tttaaagccggcaaaatagacttcctatttgtctataacatgctgcttactggctttgat
gctaaacgtctcaaaaaactttatcttggtcgaattattcgcaagcacaacttactgcaa
gctcttacacgggtgaatcgcacttataaaagtttccgttatggttatgtggttgatttt
gcggatattagcaaagaatttgatgctaccaataaagcctattttgaagaacttcaagcc
gaattaggtgacgagatggggcattattctcacctgtttaagtcccaagaggaaattcat
caagatattgagcaaatcaaagatgcgcttttccgttttgacattgaaaacgcagaaatt
tttgctgaccaagtcagccagattcaagatcgagaaaccgttttacaactaaaaaaagtg
cttggaagtgccaaagaactttataacctaattcgtttacaaggtgaatacgatttcctt
gatcatctagattttaatcaactgaacaagctctatcgagaaactgaaaatcacttgcac
ctccttaatctcaaacatgatttagagagcggcgtggacaacacaggcctgctcaatcgt
gcactggaggatgttatcttcaagttcgtcaaaattggtgaagaggagcttgtacttgct
gatcagctgaaaaacacattacgcaaaacacgagaggcgttagcgggtaactttgaccaa
caagaccctacgtttgtcacgcttaaagaagagcttcagcggctgtttaagaaaaagaac
cttagcgaagtctcgcaggaagaaatgattgcaaatatcgacgcactcaataaaatccat
gcgcgggttaatgatcttaatcgtcaaaacgaccagttgcgccaaaagtatcaaggggat
gccaaatattcccgtatccacaagcgtttacaagagcgtcaacaaaccaataaagacatt
agtgattcagagcgtaagatctttgatgcactggtcagcgtaaaagaagatgccgatgaa
caagtactcaataatagccaaattctcgacaatgaaagttactttaagcggcagatgatg
ccattagtactcaatcgtttttacaaagaacaacagattaaattaaacgcggatacctca
aagtacattaaccagttagtcgtcgcagaatacttaaaagaatataacaccggagccaat
gcgtggtag

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