Thiomicrorhabdus immobilis: THMIRHAM_07170
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Entry
THMIRHAM_07170 CDS
T08420
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAM_07170 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tib03019
]
THMIRHAM_07170 (pcnB)
Enzymes [BR:
tib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
THMIRHAM_07170 (pcnB)
Messenger RNA biogenesis [BR:
tib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THMIRHAM_07170 (pcnB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
EEP_ig-like
Motif
Other DBs
NCBI-ProteinID:
BCN92932
LinkDB
All DBs
Position
826325..827758
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AA seq
477 aa
AA seq
DB search
MQRIIRKISAFFSRAKQIPELGSIGKTSPVIVKRQKHGISRKQIDKSALDVLYGLKRGGY
DAYLVGGCVRDLLLGLEPKDFDVVTDAEPDQVKNVFKQRCRLIGRRFRLAHVRFGRMMIE
VATFRGQGDGDGRKDRFGRKGRLSGPAREVDDSGRLLRDNVYGTIEEDVWRRDFTVNALY
YDIKTFSITDYTGGLDDIKKGQLRLIGDPETRYREDPVRMIRAIRFASKLGFKIEKHTEK
PIVGLAPLLQDVSNARMFEEVLKLFHSGVAVEVFEKLRHYGLFEHLFPLTEQILSEEKDG
FPRMLVIEALKSTDARIQSGKSVNPAFLFAAMLWEPMLQRKQHFLDEGFAHQDAFYAACN
DVIEQQIKRTAIPKRFTAQMRDIWNLQHRLPKRHGDRAQKIIEHPRFRAAYDFIGVRAAA
GETEVQSIFDWWTVYQEKDPVEQVAFANSVEKPQRKKRVRRNRNFYRKRSQSGEDKS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaattattcgtaaaatcagcgcctttttctctagggcaaaacagattcctgaa
cttggttcaataggaaaaacttctcccgtcatcgttaaacgccagaaacatggcatctct
cgtaagcaaattgataaatccgctttagatgttttgtatggtttaaagcgcggtggctat
gacgcctatttggttggcggttgcgttcgcgacttattgttaggtctcgagccgaaagat
tttgatgtcgtcacggatgcagaacctgatcaagttaagaatgtcttcaaacagcgttgt
cgtttgattggccgcagattcagattggcccatgttcgctttgggcgaatgatgattgag
gtggctacctttagagggcaaggcgatggtgacggccgcaaagaccgttttggccgtaag
gggcgattatctgggccggctcgagaagtcgatgatagcggccgtctattaagagacaac
gtctatggaaccatcgaggaagatgtttggcgtcgtgattttaccgtcaacgcgctttat
tacgatattaagaccttctctatcacggattacactggtggtcttgacgatatcaagaaa
ggtcagctacgcctaattggtgacccggaaacccgatatcgtgaagatccggtgcgaatg
attcgtgcgatacgttttgcctctaaattagggtttaaaattgaaaaacatactgaaaaa
ccgattgttggattagcgccattattgcaagatgtgtctaatgctcgaatgtttgaagag
gtcttgaaactgttccatagtggtgttgcggttgaagtatttgaaaaacttcgtcattat
ggtttgtttgaacacctattcccattgacggaacaaatcctatctgaagagaaagacggt
ttcccgcgtatgttagtgattgaggctctgaaaagtacagatgctcgaattcaaagtggt
aaatcggtcaatccggcatttctctttgcggccatgctttgggagccaatgctacaacgc
aaacaacattttttagatgaaggtttcgctcatcaagatgctttttatgcggcttgtaat
gatgtgattgagcagcaaatcaagcgtaccgctattcctaagcgttttactgcacaaatg
cgggatatttggaacttgcaacatagattgccaaaacgtcatggcgatagagcgcagaaa
atcattgagcatcctcgttttagagcggcttatgattttatcggggttcgagcggccgcc
ggtgagacggaagtgcaatctatttttgactggtggacagtttatcaagaaaaagatcct
gttgaacaagtggctttcgcaaactcagttgaaaaacctcagcgaaaaaaacgtgtccgt
cgcaatcgcaacttttatcgtaaaagaagccagtccggtgaagataaatcataa
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