Thiomicrorhabdus immobilis: THMIRHAM_11010
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Entry
THMIRHAM_11010 CDS
T08420
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THMIRHAM_11010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_11010 (mfd)
Enzymes [BR:
tib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THMIRHAM_11010 (mfd)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
THMIRHAM_11010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCN93316
LinkDB
All DBs
Position
complement(1242570..1246016)
Genome browser
AA seq
1148 aa
AA seq
DB search
MKKLASLLSPEQITLKGHRSFWAPLTQSESALAIANRIQTSPGLVIILTENSQMANQLQE
NLAFFLANSTEILTFPEWETLPYDQFSPHQDIVSERLKTLYRLPSIDHGVLIVPIATFMQ
KVVPHDYIQQFTFMLKTGDTVDVEKFSQQLESGSYQRVGQVYEHGEFAVRGAIIDLFPMG
SKTPFRIDLFDDEVESIRSFDPETQRSIEQIEKIELLPAKEFNFTKQGIDLFRNKFKDYF
GDEARKAQVYKSVTEAQNIGGLEYYLPLFHEELTSLFHYLPENSLFFDFGNTEQTLDQTL
MDYSERYEIGQHNPDFPLLKPAEILLQPNQFLTELKQHHRITLETVCSEKTTAIFDTQPL
PDLGVQSNSEYPLAKLNAFLDLYKHKVIYSAETTGRRETLLTLLGKYQQHPQIVGTWQEA
IKSNQPYCIVVSPLETSIHTEQFSVISETQIFGQTVVQKRRRKRKHDDFNTAVSNLIELD
LGSPIVHIDHGVGRYLGLETLEIQGDKKEFLMIEYAGDAKLYVPVSSLHLISRYTGATPE
TAPLHRLGSDKWEKAKRKAAEKVRDVAAELLDVYAQRAARPGYAFKTPEEAYQRFASSFP
FEETPDQQQAIEAVIEDMHSELPMDRLVCGDVGFGKTEVAMRAAFIAAYDGKQVAMLVPT
TLLAHQHLENFRSRFSDWPVRIEVLSRFQTPKQQKTTLEDLKAGKVDIIIGTHKLIQKNV
DYKHLGLIIIDEEHRFGVRQKEQLKKMRTEVDVLTMTATPIPRTLNMAMNDLRDLSIIAT
APAKRLAVQTFVQEWNDDVVREASLREIRRGGQVYILYNQVDKIEKMVEHIEALIPEAKV
TYAHGQMHERELEAVMENFYHRRYNILVCTTIIETGIDIPTANTILIHRADKFGLAQLHQ
LRGRVGRSHHKAYAYMFTAGKSMLTKDAEKRLTAIAKHDTLGAGFMLASHDLEIRGAGEL
LGDGQSGQIQEIGFGLYSELLERAVKALKSGKQPELNTALHSSSEVDLGVTALIPEDYLP
DVHTRLVFYKRIASAHSKADLRELEVEMIDRFGLLPDPVKQLFAVTRIKLLIEPIGITKL
DAGESMIRIQFNNEPNIDPMKLIKLIQSQPKQFQLKGQTELSFFDTMPTIEQRISAIELV
IRSIATTE
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacttgcgtcattactctcgccagaacaaatcacccttaaaggccaccgttca
ttttgggcacctctaacccaatctgaaagcgctttggcaattgctaatagaattcaaacg
tcaccaggcctggtgattattcttactgaaaactcacaaatggccaaccagctccaagaa
aacttggcgttttttcttgcgaactctactgaaatcctaacctttcctgagtgggaaacc
ctgccctatgaccaattctcaccgcatcaagacattgtttcagaacgactaaaaacgctt
tatcgtctacccagtattgatcatggtgtcttgattgtgcccatcgccactttcatgcaa
aaagtggtaccgcatgattacattcaacagtttacttttatgcttaaaaccggcgacacg
gtagatgtagaaaaattcagccagcagcttgaatcaggaagctatcaaagagtcggtcaa
gtatacgagcatggtgaatttgcagtcagaggagcgattatcgacctattcccgatgggt
agtaaaaccccattcagaatagacttgtttgatgatgaagtggaatccatccgtagtttt
gatccagaaacccagcgctctattgaacagatagaaaagattgaattactacctgcaaag
gagtttaacttcaccaagcaaggaattgatttatttagaaataaattcaaagactatttt
ggtgatgaggcacgaaaagcgcaagtttataaaagcgttaccgaggcgcaaaacattggc
ggtctagagtattacctacccttatttcatgaagaactgaccagcctgtttcactatctg
cccgaaaatagtctttttttcgattttggcaataccgaacaaactcttgatcaaacattg
atggattacagtgaacgttatgaaattggccaacataatccagactttccgttactcaag
ccggccgaaattttattacagccaaaccagttcttaacggaattaaagcaacatcataga
atcactctggaaacggtttgttcggaaaaaaccacggccatatttgacacccaacctcta
ccggacttaggtgtccaatccaacagtgaatatccgctagccaaactcaacgccttccta
gacctctataaacacaaggtcatatacagtgccgaaaccaccggtcgtcgtgaaacctta
ctcaccctgcttgggaaatatcaacaacaccctcaaattgtcggaacctggcaggaagcg
atcaaatccaatcagccatactgcattgtcgttagtccgttagagacgtcaatccatacc
gagcaattcagtgtaatctctgaaacccaaatttttgggcaaaccgtcgttcagaagcgt
cgccgtaagcgtaaacacgatgacttcaataccgctgtcagtaacttgatagaactcgac
ttaggcagtccaatcgtacacatcgaccacggtgttggtcgctatctaggtctggaaact
ctagaaatccaaggcgataaaaaagagttcttgatgatcgaatacgcaggtgatgcaaaa
ctctacgttccagtttcatcgctacacctaatcagccgttataccggtgccactccagaa
actgcacctctgcaccgtttaggcagcgataaatgggaaaaggccaaacgtaaggccgca
gaaaaagtccgcgatgtagctgcagagttattggatgtttacgcacaacgtgccgccaga
cccggttacgcctttaaaacacccgaggaagcttaccaacgctttgcctccagctttcca
tttgaagaaacccccgatcaacaacaagcgatagaagccgttatcgaagatatgcattcg
gaacttccgatggatcgactggtttgcggtgatgttggtttcggtaaaaccgaagtcgcc
atgcgtgcggcttttattgccgcctacgatggtaaacaagtcgccatgcttgtgccaact
accctattggcgcatcagcacctggaaaatttcagaagccgtttttcggattggccggta
cgtattgaagtgctgtcacgttttcaaacgccaaaacagcaaaaaactactttagaagac
cttaaggccggcaaagtcgacatcattatcggcacccacaaattgattcaaaagaatgtc
gattacaaacatctggggttaatcatcattgatgaagagcatcgtttcggggtcaggcaa
aaagagcaacttaaaaagatgcgcaccgaagtggatgtcttaaccatgaccgccacacca
atcccacgaacgctgaatatggccatgaatgaccttagagacctatccattatcgccact
gcgcccgccaaacgccttgcggtacaaaccttcgtgcaggaatggaatgacgatgtggtc
agagaggcatccctgcgtgaaattcgtcgaggcggccaggtttacattctttataatcaa
gtcgataagattgaaaagatggttgaacatatcgaggcactgattcccgaagccaaggtg
acttacgcccacgggcaaatgcacgaacgtgaactggaagcggtgatggaaaatttctat
catcgccgttataacatcctagtttgcaccactatcattgagaccggtatcgacattcct
accgccaacaccatcctcatccatcgtgccgataaattcggtttagctcagctacaccag
ctacgaggccgtgtcggacgttcacatcacaaagcttacgcttatatgtttaccgctgga
aaatcgatgttgaccaaggacgccgaaaaacgcctcactgcgatagccaaacacgatacc
ttaggagcgggctttatgcttgccagtcatgatttggaaatccgcggtgcgggtgaactt
ttaggtgatgggcaatcaggacagattcaggagattggatttggcttgtacagtgaactg
cttgaacgtgccgttaaagctctcaagtcgggcaaacaacctgaactcaataccgcatta
catagtagtagcgaagttgatttgggggtaaccgccttgattcccgaagactatttgccc
gatgtgcacacccgtttggttttctacaaacgcattgccagcgctcacagcaaagccgac
ctacgtgaactggaagtagagatgattgatcgctttggtttactgcctgacccggttaaa
caattgtttgcagtgacccggattaaactgctcatcgaaccgattggcatcaccaagctt
gatgctggggaatcgatgattcgcattcagttcaataatgaaccaaacattgacccaatg
aagctgattaagttaattcaatcacaacctaagcaatttcaactaaaagggcaaacggaa
ctgagctttttcgatacaatgcccactattgaacaaagaatatcggcgattgaactggtt
attcgcagcattgcaaccaccgagtga
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integrated database retrieval system
