Thiomicrorhabdus immobilis: THMIRHAM_11550
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Entry
THMIRHAM_11550 CDS
T08420
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib02020
Two-component system
tib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
THMIRHAM_11550 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THMIRHAM_11550 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tib03021
]
THMIRHAM_11550 (rpoN)
Transcription machinery [BR:
tib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THMIRHAM_11550 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_IclR
Gp6_2nd
Motif
Other DBs
NCBI-ProteinID:
BCN93370
LinkDB
All DBs
Position
complement(1304230..1305738)
Genome browser
AA seq
502 aa
AA seq
DB search
MALMPGLQINMGQQLKLTPQLQQSIKILQYSALEVQQTIEATLETNFMLEVNEEFDQDDD
EKDNLEAANDPSSDEKTEIANATDSETPLDINQSDTIKDDLEIDYDWEEVYTDHTPASNQ
SAEEYTSAETYTASEESLHDHLYWQSDIYPWDENESVIASYIIDDINEEGYLSSSLEDIK
DSIANNEPDVIVSVPEVEAVLKVIQQFEPTGVGARTVQESLLLQLANQPKTPYVMTAIQL
ITENFDWLSFHDSKRIKKLYGLDDDELTQLIRLIQSLNPRPGRDYSSTQSEVIVPDLRLR
RVKDGWLVELNSNAFPRLSINTAYIDLASSLKNDEQSKQIKEQLLEAKGLIKSIHSRGET
LLRVGKFIVEKQERFFEEGEHAMQPLVLREVADYLDLHESTISRATNQKYIQTPRGTFEL
KYFFSTGVSQYGSADQSAIAIKAHIKELIDAEDPKKPLSDSKLMSLLEDKDIVVARRTIA
KYREALKIPSSSERKKLNKFKF
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggcactgatgcccggcttacaaattaacatgggacagcagcttaagctcaccccacaa
ttacaacagtcgattaaaatattgcagtactctgcacttgaagttcaacaaaccattgaa
gctactcttgaaaccaatttcatgcttgaagttaatgaagagtttgatcaagatgacgat
gaaaaggataatcttgaagcggctaatgacccctcttccgatgaaaagacagaaatagct
aacgctacggatagtgaaacccctttagacattaatcaatccgacacgattaaagatgat
ttagagattgattatgattgggaagaagtctacacagaccataccccagcttcgaatcaa
tccgcggaagaatataccagtgcggaaacctataccgcttcggaagagtcgttacatgac
cacctttattggcagtccgatatttatccttgggatgaaaatgaatcggtcatcgcttca
tatatcatcgatgacatcaatgaagagggttacttatccagctctttggaagatataaag
gattcaattgccaacaatgaacctgatgtaatcgtttcagttcctgaagttgaagcggta
ctcaaagttatccagcagtttgaaccgacgggggttggtgcgagaaccgtccaggaaagc
ttgctattgcaattagccaaccaacctaaaacaccttatgtcatgacggccatccagtta
attaccgagaatttcgattggctatcattccacgattccaaaagaatcaagaaactatat
ggcttagatgatgacgaactaacccagttaattaggctgattcaatctttaaacccaaga
cctgggcgtgactactccagcacacagtcagaagtgattgtgcctgacctgagattgcgt
agagtcaaagatggttggctggttgagttaaacagcaatgccttccctcgcctgtctatc
aataccgcttacattgacttggcgagcagcttaaaaaacgacgagcaatctaagcagatt
aaagaacaattgctggaagcaaaaggtttgattaaaagtatccatagccgtggtgaaaca
cttttgagagtgggcaagtttattgttgaaaaacaagagcgcttttttgaagaaggagaa
catgctatgcaaccattggttttaagggaagtcgctgactatttagatttacatgaatca
accatctcacgagcgactaaccaaaaatacattcagacacctcgtggaacttttgaactg
aagtacttcttttctacaggggttagtcaatatggaagtgcggatcaatctgccatcgca
atcaaggctcatatcaaagagttgatagacgcagaagaccctaaaaagccattaagtgac
agtaagctaatgagtcttttagaggataaggacattgtggttgctcgcaggacgattgcg
aaataccgagaagccctgaaaatcccatcctcaagtgagcgaaaaaaactgaataaattt
aagttttaa
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