Thiomicrorhabdus immobilis: THMIRHAM_13940
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Entry
THMIRHAM_13940 CDS
T08420
Symbol
aspS
Name
(GenBank) aspartate--tRNA ligase
KO
K01876
aspartyl-tRNA synthetase [EC:
6.1.1.12
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
THMIRHAM_13940 (aspS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
tib01007
]
THMIRHAM_13940 (aspS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tib03016
]
THMIRHAM_13940 (aspS)
03029 Mitochondrial biogenesis [BR:
tib03029
]
THMIRHAM_13940 (aspS)
Enzymes [BR:
tib01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.12 aspartate---tRNA ligase
THMIRHAM_13940 (aspS)
Amino acid related enzymes [BR:
tib01007
]
Aminoacyl-tRNA synthetase
Class II (A)
THMIRHAM_13940 (aspS)
Transfer RNA biogenesis [BR:
tib03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
THMIRHAM_13940 (aspS)
Prokaryotic type
Other AARSs
THMIRHAM_13940 (aspS)
Mitochondrial biogenesis [BR:
tib03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
THMIRHAM_13940 (aspS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
GAD
tRNA_anti-codon
tRNA-synt_2d
Motif
Other DBs
NCBI-ProteinID:
BCN93609
LinkDB
All DBs
Position
complement(1550428..1552209)
Genome browser
AA seq
593 aa
AA seq
DB search
MRTQYCGQVTESFIDQTVTVAGWVHRRRDHGGVIFIDLRDREGLVQVVVNPDTAEVFAKA
ERLRSECVLQITGKVIPRTEGTINPNMTTGKIEIVASELNVLSMAEPIPFQLDDKNVGEE
TRLKYRYIDLRRDEMQQTLMLRYKVTRSMRRYLDDNNFMDIETPILTKSTPEGARDYLVP
SRTHQNKFFALPQSPQLFKQLLMMSGFDRYYQITRCFRDEDLRADRQPEFTQLDIETSFM
EEDAVMNLMEGLTKTIFKETIGHEFEGDFPRMPYSEAIQKYGIDRPDLRIDMQLVDIADL
LQDIEFKVFAAPAKDPKGRVVALKVPGAGSMSRKEIDEYTKFVGIYGAKGLAYIKVNDLS
AGIDGLQSPIVKFFPDQVMDIMQRVGAQDGDIVFFGADNAKVVNDALGALRVKIGEDLGM
LNGKFKPVWVVDFPMFEADEETARMTAIHHPFTQPKATTEEILNHDEPEQMLSKAYDLVI
NGLEVGGGSVRIHDTNMQAAVFKLLGISDEEAQDKFGFLLNALKYGCPPHAGMAFGLDRL
VMILGDIDSIRDVIAFPKTQSAACLLTEAPGLVDNAQLAELALRFRKPARGEA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacgcagtattgtgggcaagttacagaatcatttattgaccaaacagtaaccgtt
gcaggttgggtgcatcgtcgccgtgaccacggtggggttatctttatcgatttacgtgac
cgtgaaggtttggtgcaagtggtggttaaccctgatacagcggaagtatttgctaaagcg
gagcgtttgcgttctgagtgtgtattgcagattaccggtaaagtcattccacgtacagag
ggtacaatcaaccctaatatgacaacgggtaaaattgaaatcgttgccagcgagctgaat
gtcttgagtatggctgagcctattccatttcagttggatgataagaatgtgggtgaagag
actcgtctaaaatatcgttatatcgatttacgtcgtgatgagatgcaacagaccttgatg
ttgcgttataaggtgactcgttcaatgcgtcgttatttagatgacaataacttcatggat
attgaaacaccaatcctaaccaagtcaacaccagaaggtgcgcgtgactacttggtgcca
agtcgaactcaccagaacaaattcttcgctttgccgcagtctccacagctattcaagcag
ttgttgatgatgtcaggttttgaccgttactatcaaatcacacgttgtttccgtgatgag
gatttacgtgccgaccgtcagcctgaattcacccagttggatatcgaaacttcatttatg
gaagaagatgcggtaatgaatttgatggaagggctaaccaaaaccatcttcaaagaaacg
attggtcatgagtttgaaggcgacttccctcgtatgccttattccgaagcgattcaaaag
tacggtattgaccgtcctgacttgcgtattgatatgcagttagtcgatatcgctgatttg
ttgcaagatatcgaattcaaagtctttgccgcacccgctaaagacccgaaaggtcgtgtt
gtagcccttaaggttcctggcgcaggttctatgagccgcaaagagattgacgaatacacc
aagtttgtgggtatctacggtgcaaaaggtttggcttatatcaaggtgaatgatttatct
gcgggtattgatggtttgcagtcgccgattgttaaattcttcccagaccaggttatggat
atcatgcaacgtgtcggtgcgcaagatggtgatatcgtattctttggtgcggataacgct
aaagtcgttaacgatgcgttaggggctttgcgtgttaagattggtgaagatttagggatg
cttaacggcaagttcaaaccggtatgggtggttgacttcccgatgtttgaagcggatgaa
gaaacggctcgaatgacggcgattcaccatccattcacgcaaccaaaagcgaccacggaa
gagattctaaaccacgatgaacctgaacagatgttgtctaaagcgtatgacttggttatc
aacgggttggaagtcggtggtggttcggtacgtattcacgataccaatatgcaagcagcc
gtctttaaattattaggcatttcagatgaagaggcgcaagataagtttggcttcctattg
aacgcattgaagtacggttgtcctccgcatgcgggtatggcatttggtttggatcgtttg
gtgatgattcttggggatatcgattccattcgtgatgtaatcgctttccctaaaacccag
tctgcggcctgtctattaactgaagcaccaggcctggtcgataacgcacagcttgctgag
ttggctctacgttttagaaagccagcacgtggtgaagcttaa
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