Thiomicrorhabdus immobilis: THMIRHAM_18050
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Entry
THMIRHAM_18050 CDS
T08420
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib03030
DNA replication
tib03430
Mismatch repair
tib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THMIRHAM_18050 (holA)
03430 Mismatch repair
THMIRHAM_18050 (holA)
03440 Homologous recombination
THMIRHAM_18050 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tib03032
]
THMIRHAM_18050 (holA)
03400 DNA repair and recombination proteins [BR:
tib03400
]
THMIRHAM_18050 (holA)
Enzymes [BR:
tib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THMIRHAM_18050 (holA)
DNA replication proteins [BR:
tib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
THMIRHAM_18050 (holA)
DNA repair and recombination proteins [BR:
tib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
THMIRHAM_18050 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
BCN94020
LinkDB
All DBs
Position
complement(2016384..2017412)
Genome browser
AA seq
342 aa
AA seq
DB search
MILASAFLNQVNSGSLAVKPIYLLYGEEPLFLRDSLDGLKKQLFSLGYMTSESYDVDANF
DWQSLQMDTQAGSLFSESRMILINMPKGSPGRDGGKFFQDWCAYVQALPPEIVLVVLCER
LDSRQVKAKWVTAIESAGLVVQAKPVPTNALPGWCQTQAQKQGLSLEPEAANLLADRVEG
NLLAADQEITKLSLSLPAGSVITAQDILEHVVDQAHYQLFALATAMLNGNTAYSVQMLAR
LQQEGIEAPVILWLLSKELRQLIELSQLTQQISLNQAFQKCRIWQSRQGEYSSAMQRQGL
QQWQALLKQALQIDMMIKGIKPTLNEREVWFGLADLVAKIAR
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
gtgattttagccagtgcgttcctaaaccaggtcaatagcggtagcttggcggtaaagccc
atctatttactgtatggcgaagaaccgctgtttttacgtgatagtttggatggcttaaag
aaacagctgttttcattaggttacatgaccagtgaaagctacgatgtcgatgccaatttc
gattggcaaagcttgcagatggatacccaagcgggttctctgttttccgaatcacggatg
attttgattaatatgcccaaaggctctcctgggcgagatggcggtaagttttttcaagat
tggtgcgcttatgtgcaagctttgccaccggaaattgtcttggtggtgttgtgtgaacgt
ttggatagccgtcaggttaaggccaagtgggttaccgcaatcgagtcggcaggcctggtg
gttcaagccaaaccggttcctaccaatgcattgccggggtggtgccaaactcaagcacaa
aaacaggggttgagtttggagcctgaagcggcgaatttattggctgaccgagtggaaggt
aatttactggccgctgaccaagaaatcaccaaactctctttgagtttacctgccggttca
gtgataaccgcacaggatattttggagcatgtggttgaccaagcacattatcaactgttt
gctttagctaccgcgatgttgaatggcaataccgcttacagtgtgcaaatgttggcgcgt
ttacaacaagaaggtattgaagcacccgtgatactctggctgttgtctaaagagttaaga
cagttgattgagctttcgcagcttacccagcaaatttcgttgaatcaggcgtttcagaaa
tgccgcatttggcagtcgcgtcagggtgaatacagcagtgcaatgcaacgccaagggttg
caacaatggcaagcattacttaagcaagctttgcagattgatatgatgataaaaggcatt
aagccgacgttgaatgaacgtgaggtgtggtttggtttagcggatttagtcgcaaaaata
gcgcgttaa
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