Thermococcus indicus: FH039_01640
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Entry
FH039_01640 CDS
T07099
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tic
Thermococcus indicus
Brite
KEGG Orthology (KO) [BR:
tic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tic03016
]
FH039_01640 (thpR)
Enzymes [BR:
tic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
FH039_01640 (thpR)
Transfer RNA biogenesis [BR:
tic03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
FH039_01640 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
DUF1045
IMS_C
HGD-D
TraC
VAPB_antitox
Motif
Other DBs
NCBI-ProteinID:
QDA30575
UniProt:
A0A4Y5SIQ6
LinkDB
All DBs
Position
complement(319676..320230)
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AA seq
184 aa
AA seq
DB search
MRAFIAIEVSDEVRDNLVKAQERIGSKSAKIKFVERENFHVTLKFLGEIDEVLAEEVKRA
LEEIAKKHRKHRVRVKGIGVFPNPNYVRVIWAGIENDDGIKAIAKDVEREMRRLGFKKDR
DFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFDVEAIELKKSTLTPKGPIYETVARF
ELAE
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgagggcgttcatagccattgaggttagcgatgaagtccgcgacaacctcgtaaaggcc
caggagagaatagggagcaaatccgctaagataaagttcgtcgagagggagaacttccac
gtcacactcaagttcctcggcgagattgacgaggttttagcggaggaggtcaagagggcc
ctggaggaaatagcgaagaagcacaggaagcaccgcgtcagggtcaaggggataggagtc
ttcccgaacccgaactacgtccgcgtaatctgggctggaatagagaacgacgatgggata
aaggcgatagcaaaggacgtcgagcgggaaatgaggaggctcggcttcaaaaaggacagg
gacttcgtggcgcacataaccataggcagggtgaagttcgtcagggacaagctggagctg
gcgatggccctcaaagacctcgccaacgaggatttcggggagttcgatgtcgaggccata
gagctgaagaagagcacgctcactccaaagggcccgatttacgagaccgttgcgaggttc
gagctggcagagtga
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