Thermococcus indicus: FH039_02620
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Entry
FH039_02620 CDS
T07099
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
tic
Thermococcus indicus
Pathway
tic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH039_02620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tic03019
]
FH039_02620
Messenger RNA biogenesis [BR:
tic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FH039_02620
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
FH039_02620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
EF-hand_1
Motif
Other DBs
NCBI-ProteinID:
QDA30726
UniProt:
A0A4Y5SIS2
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All DBs
Position
502524..503273
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AA seq
249 aa
AA seq
DB search
MMGKPEDLKLIDENGKRVDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPR
EIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPR
TSIDLFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKDED
NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFVEAVRLAIKGAKAVYQKQREALKVKYLK
IAEEVGGGE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgatgggcaagcccgaggatttaaagctcatagatgagaacggaaagagagtcgatggg
agaaagaagtacgaattgagacccattaagatggaagttggtgttctaaagaacgctgat
ggctccgcctacgttgagtggggtaagaacaagatcctggccgcggtttacgggccgaga
gagatacaccccaagcacctccagaggccggacagagctattttgcgcgtccgctacaac
atggccccattcagcgtcgaggagaggaagaagccaggcccggacaggagaagcgttgag
ataagcaaggtcataaggggcgcccttgagcctgctttaatcctcgagatgttccccagg
acttccatagacctgttcattgaggttctccaggccgatgcgggaacgcgcgtcgctgga
ataaccgcggcctcactcgccctcgccgacgcgggtgtgcctatgagggacctagtcgcc
gcctgcgccgcgggcaagatagagggcgagatagtgcttgacctcaacaaggacgaggac
aactacggtgaggccgacgttccggtggcgataatgccgctcaagaacgacatcaccctc
ctccagatggacgggtacctcacgaaggatgagttcgtcgaggccgtgaggctcgccatc
aagggtgccaaggcggtctatcagaagcagcgcgaggcgctgaaggtcaagtatctcaaa
atagccgaggaggtcggtggaggtgagtga
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