KEGG   Thermococcus indicus: FH039_07000
Entry
FH039_07000       CDS       T07099                                 
Name
(GenBank) DNA polymerase sliding clamp
  KO
K04802  proliferating cell nuclear antigen
Organism
tic  Thermococcus indicus
Pathway
tic03030  DNA replication
tic03410  Base excision repair
tic03420  Nucleotide excision repair
tic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FH039_07000
   03410 Base excision repair
    FH039_07000
   03420 Nucleotide excision repair
    FH039_07000
   03430 Mismatch repair
    FH039_07000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tic03032]
    FH039_07000
   03400 DNA repair and recombination proteins [BR:tic03400]
    FH039_07000
DNA replication proteins [BR:tic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FH039_07000
DNA repair and recombination proteins [BR:tic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FH039_07000
   MMR (mismatch excision repair)
    Other MMR factors
     FH039_07000
  TLS (translesion DNA synthesis) factors
   Other TLS factors
    FH039_07000
SSDB
Motif
Pfam: PCNA_N Rad1 PCNA_C Rad9 Chalcone_2
Other DBs
NCBI-ProteinID: QDA31396
UniProt: A0A4Y5SKM3
LinkDB
Position
complement(1269927..1270676)
AA seq 249 aa
MPFEIVFDGAKDFADLIATASNLIDEAAFKITEEGIGMRAMDPSRVVLIDLNLPESIFSK
YEVEEEETIGINMDHFKKILKRGKNKDTLILRKGDENFLEVTFEGTAKRTFKLPLIEVEE
LELDLPELPFTAKVIVLGEVLKEAVKDASLVSDAMKFIATENEFIMRAEGETNEVEIKLT
LEDEGLLDLEVEEETKSAYGISYLADMIKGIGKADEVIIRFGNEMPLQMEYPIRDEGRLI
FLLAPRVED
NT seq 750 nt   +upstreamnt  +downstreamnt
atgccgttcgaaatagttttcgatggtgccaaggattttgccgatcttatagccaccgcg
agcaacctcatcgacgaggctgccttcaagataaccgaggaaggaattggaatgcgcgcg
atggacccgagcagggtcgttctcatcgacctcaacctcccggagagcatcttctccaag
tacgaggtcgaggaagaggaaaccataggaatcaacatggaccacttcaagaagatactc
aagcgcggcaagaacaaggacacccttatcctcagaaagggcgacgagaacttcctcgag
gtcaccttcgaaggcaccgccaagagaaccttcaagctcccgctcatcgaggttgaggag
cttgagctcgacctcccggagctgccgttcaccgccaaggtcatcgtcctcggtgaggtt
ctcaaggaggccgtcaaggacgcttcccttgtcagcgacgccatgaagttcatagccacc
gagaacgagttcataatgcgcgccgagggagagaccaacgaggtcgaaataaagctcacc
cttgaggacgaaggcctgctcgaccttgaggttgaggaggaaaccaagagcgcctacgga
atcagctacctcgcggacatgataaagggcatcggcaaggccgacgaggtcataatccgg
ttcggcaacgagatgcccctccaaatggagtacccgataagggacgagggcaggctgata
ttcctcctcgccccgcgcgtcgaggactga

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