Thermococcus indicus: FH039_09160
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Entry
FH039_09160 CDS
T07099
Name
(GenBank) DNA double-strand break repair ATPase Rad50
KO
K03546
DNA repair protein SbcC/Rad50
Organism
tic
Thermococcus indicus
Brite
KEGG Orthology (KO) [BR:
tic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tic03400
]
FH039_09160
DNA repair and recombination proteins [BR:
tic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FH039_09160
Archaeal homologous recombinant proteins
FH039_09160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_15
GAS
Rad50_zn_hook
AAA_29
AAA_21
ABC_tran
EzrA
MscS_porin
DUF1664
DUF5713
SbcC_Walker_B
RsgA_GTPase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QDA31733
UniProt:
A0A4Y5SLF2
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All DBs
Position
1699009..1701672
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AA seq
887 aa
AA seq
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MRVRRIKIRNFRAHEMSEVEFSDGINLLIGQNGAGKSSILEAIFVALYMGHPSFPRGYLQ
ANTRVNSTGGLGLILEFEHNGKSYRIVRDSKKSELLEGREMIAEKSSDVARWVERNVYPI
QVFTNALYIRQGEIEGIITNREVMEKVLRKVLGIEDYENAERNAADVIRELKRRRDYLRK
LIERKAEVEANLREAEKRFSETLRRISGLRKRVEELEGAFRKAEEDYSRLKALKSELEGL
EKRRAVLEQRIKAEKGRIEDYKAQIEEVKREIGELEEKLARLRELEPLEKEYLKLKSLLS
LKDELSKLETAEARLAEKRKALEERAARIKEVSARIAELEGEEKSLRETYEELKRKNGLY
QRALQRKAEAERYLKELERAGVTPESLEKELKAVENSKEELESLREEVTGIREEIATLKG
LRESLIENLSKLEGARVCPLCKRPIGEHDEEEIRAEYDAEITSIEKKLNRLSKKLKKLNE
REIELRGVIRKEPKLIRLKKTADLLREVEEKLAKYDLEELEKAAEEFEKAKARLIEIKKE
LRHLREELEELEKAKDELGRIEKKLQEIGRETRRIMERLENEGFGSFEAVEERMKELEPA
YREYLSLRDVPTQLERMKKKLSLLDKRRDESIEALRKLEGEFRELGAEIEKLSREFSEEA
YAEAEKRYMATARELEKARTELRGAEELRDEVMKLLDELKAKRKEIEGAERELETVEKAM
ADMTAFREKVARLKAEEELRGLEEVQKLAGETFSEMTEGKYQGIKLKREKKFGKERIELK
VLYAGNEVGLEFLSGGERIALGLAFRLALSLYKVGNLELLILDEPTPFLDEERRKKLVEI
ISSQLRKIPQVIIVSHDEELKDAADYVIRVLNVGGKSRVEVESIGAY
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
gtgagggtaaggaggataaagatcaggaacttcagggcacacgagatgagcgaggtggag
ttcagcgacggcataaacctgctgatagggcagaacggcgccggcaaaagctcgatcctc
gaggcgattttcgtggccctctacatggggcacccgagcttcccgaggggctaccttcag
gcaaacacccgcgtcaactcgaccgggggactgggattgatactggagttcgagcacaac
ggaaagagctacagaatcgtcagggactccaagaagagcgagctccttgagggcagggag
atgatagctgagaagagctccgacgtggcgcgctgggtcgagaggaacgtctacccgatc
caggtattcaccaacgcgctctacataaggcagggtgagatagagggtataatcacgaac
cgcgaggtaatggaaaaggttctgcgcaaggttctgggcatagaggactacgagaacgcc
gagaggaacgcggcggacgtgataagggaactcaagcggaggagggactacctcagaaag
ctcatcgagagaaaggccgaggtggaggcgaacctccgcgaggccgagaagcgcttctcc
gagacgctgaggaggataagcgggctccggaagagagttgaagaactcgaaggtgccttc
aggaaagcggaggaggattactcgcgcctcaaggccctgaagagtgagcttgaggggctg
gagaagagaagggcagtcctggagcagaggataaaagccgaaaagggtagaatagaggac
tacaaagcgcagatcgaggaagtgaagagggagataggagaacttgaggagaaactcgca
cgcctcagagagctcgaacccctcgaaaaggagtacctgaagctgaagtcgctcctctcc
ctcaaggacgagctgtcaaagcttgaaaccgccgaagcaagactggcggagaagagaaag
gcgcttgaggagagagccgccaggatcaaggaggtctccgcaaggatagcggagctcgag
ggggaggaaaagtccctccgcgagacctacgaggagctgaagaggaagaacggcctctac
cagcgcgccctccagaggaaggccgaggcggagaggtatctgaaagaactcgagcgggca
ggggtcacccccgagagcctggaaaaggagctaaaagctgtcgagaactccaaggaggag
cttgagagcctccgcgaggaagtgaccgggataagggaggagatcgcgactctcaaggga
ctgagggagagcctcatcgagaacctctcgaagctggaaggcgccagggtctgcccgctg
tgcaagaggcccatcggggagcacgacgaggaggagatacgggcagagtacgacgccgag
ataacctccatcgagaagaagctgaataggctatcaaagaagctcaaaaagctcaatgaa
cgggaaattgagctcaggggggttattcggaaggaaccaaagctcataaggctgaagaag
acggcggacctcctgagggaggtcgaggagaagctggcgaagtacgacctggaagaactc
gagaaggccgcggaggagtttgaaaaggccaaggcaaggctcatcgagataaagaaggag
ctgaggcacctcagagaggaacttgaggagcttgagaaagcaaaagacgagctggggagg
atagagaaaaagctccaggagataggcagggaaacgaggaggataatggaaaggctggag
aacgagggcttcggctcgttcgaggccgtcgaggaaaggatgaaggagctcgagccggcc
taccgcgagtacctctcgctcagggacgtcccgacccagcttgagaggatgaagaagaag
ctctccctcctggataagaggcgcgatgagagcatcgaggccctcagaaaactggagggg
gagttcagggagctgggggcggagatagaaaaactctcgcgggagttctcggaggaagcc
tatgccgaggcagagaagaggtacatggcgaccgcgagggaacttgagaaagccagaacg
gagctcagaggcgctgaagagctgagggacgaggtaatgaagctcctcgacgagctgaag
gcaaagaggaaggagatagaaggggccgaaagggagctggagaccgtcgagaaggccatg
gcagacatgaccgctttcagggagaaggtggcgaggctcaaggcagaggaggaactcagg
ggtctcgaggaggtacagaagctcgccggcgagaccttctcggagatgacggagggcaag
taccaggggataaagctcaaacgcgagaagaagttcggaaaggagcggatagagctgaag
gtgctctacgccggcaacgaggtcggtctggaattcctgagcggtggggagaggatagcg
ctcggtttagcattccgcctggcgctctcgctctacaaggtggggaaccttgagcttctg
atcctggacgagcccacgcccttcctggatgaggagcgcaggaagaagctcgtggagata
atatcgagccagctgaggaagataccgcaggtcataatcgtttcccacgacgaggagctg
aaggacgcggcggactacgtgataagggtcctgaacgtcggcggcaagagccgcgtggag
gtggagagcattggagcgtattag
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