Thermococcus indicus: FH039_09895
Help
Entry
FH039_09895 CDS
T07099
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tic
Thermococcus indicus
Pathway
tic04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
FH039_09895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tic03019
]
FH039_09895
03009 Ribosome biogenesis [BR:
tic03009
]
FH039_09895
04131 Membrane trafficking [BR:
tic04131
]
FH039_09895
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tic04147
]
FH039_09895
Messenger RNA biogenesis [BR:
tic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
FH039_09895
Ribosome biogenesis [BR:
tic03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
FH039_09895
Membrane trafficking [BR:
tic04131
]
SNARE
SNARE associated proteins
Others
FH039_09895
Autophagy
Aggrephagy
Other aggrephagy associated proteins
FH039_09895
Exosome [BR:
tic04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
FH039_09895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
AAA_22
CDC48_2
AAA_5
TIP49
AAA_14
nSTAND3
AAA_33
Vps4_C
RNA_helicase
AAA_28
IstB_IS21
AAA_24
Sigma54_activat
Mg_chelatase
NPHP3_N
AAA_7
DUF815
ATPase_2
AAA_18
Bac_DnaA
Parvo_NS1
ABC_tran
AAA_17
ATPase
AAA_lid_PRS2_C
PhoH
TsaE
AAA_3
NB-ARC
SLFN-g3_helicase
Zot
DUF2913
COG3_C
DUF2087
Motif
Other DBs
NCBI-ProteinID:
QDA31849
UniProt:
A0A4Y5SNN2
LinkDB
All DBs
Position
complement(1828501..1831014)
Genome browser
AA seq
837 aa
AA seq
DB search
MIFGKDEERYEKIKLRVAEALKRDVGRGIVRFDRKFQKQLGVEPGDIVELIGDRTTAAIV
ANPHPDDRGLDIIRMDGYIRRNAGVSIGDYVTVAKAEVQEAKKVTLAPAQKGVFIQIPGD
MVKQNLLGRPVMKGDLIVASSRGETYYGGSPFDELLRGLFETMPLGFGELKFVVVSTSPK
GVVQITYNTEVEVLPQAVEVREEAIPEVTYEDIGGLSDAIQKIREMVELPLKHPELFERL
GIEPPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEA
EENAPSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIAATNRPDAL
DPALRRPGRFDREIEVGVPDKKGRKEILQIHTRGMPLEPDYDKETVLRVLKELLKRKAFD
EEVLKKLMKRVEGARSDDEVKEILKSASEVYPEVRTRLIEGMLERIAEKTHGFVGADLAA
LAREAAMVVLRRLINEGKISPEHEKIPPEVLQELRVRKADFYEALKMVDPSALREVLIEM
PNVRWEDIGGLQEVKQELKEAVEWPMKYPKAFQRLGIEPPRGVLLYGPPGTGKTLLAKAV
ATESEANFIGIRGPEVLSKWVGESEKRVREIFRKARQAAPTVIFIDEIDAIAPARGMEGD
RVTDRLINQLLTEMDGIERNSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARL
EILRVHTKRVPLAGDVNLRELAKKTEGYSGADIEALVREAALLAMRRIMGELPVELVEEE
SEEFLERLRVSRKDFEAALKKVRPSITPYMLEYYRNFDENRRKMGEKKTEGPDYYTF
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcggtaaggatgaggagaggtacgagaagattaagctccgcgtggcggaagcc
ttgaagagggacgttggcaggggaatagtccggttcgacaggaagttccagaagcagctt
ggggtggagcctggggacatcgtggagctgataggcgaccgcacaaccgccgcgatagtg
gccaacccccacccggacgacagaggacttgacatcatcagaatggacggctacatcagg
agaaacgccggggtcagcataggcgactacgtgacggtggcgaaggccgaggtgcaggag
gcgaagaaggtcacccttgccccggcccagaagggcgtcttcatccagatacccggcgac
atggtgaagcagaacctcctcggaaggcccgtgatgaagggagacctcatcgttgcgagc
agcaggggagagacttactacggcggctcacccttcgacgagctgctcagggggctcttc
gagacgatgcccctcggttttggagagctgaagttcgtggtggtcagcaccagccccaag
ggcgtcgtccagataacctacaacaccgaggtcgaggttcttccacaggcggttgaggtg
cgcgaggaggcgattccggaggttacctacgaggacatcggcggtctgagcgacgccatc
cagaagatacgcgagatggtggagctcccgctcaagcacccggaactcttcgagcgcctt
ggaatagagccgcccaagggcgtactcctctacggtccgccgggaaccggtaagaccctc
ctcgcgaaggccgtcgccaacgaggcaaacgcgcacttcatagccatcaacggaccggag
ataatgagcaagttctacggtgagagcgaggagaggctgagggagatattcaaggaagct
gaagaaaacgcccccagcatcatattcatcgacgagattgacgcgatagcgcccaagagg
gaagaggtcgttggagaggtcgagaaacgcgttgtcagccagctcctcaccctgatggac
ggcctcaagggacgcgggaaggtcatagttatcgccgccaccaacaggcccgacgccctc
gacccggccctcagaaggcccggacgcttcgacagggagatagaggtgggggttcccgac
aagaagggcaggaaggagatactccagatacacaccaggggaatgccccttgagccggac
tacgataaggaaaccgttctcagggttctgaaggagctcctcaaacggaaagcctttgac
gaggaggttctcaaaaagctgatgaagcgcgttgagggggccagaagcgacgacgaggta
aaggagattctgaagagcgcgagcgaggtttatcccgaggtcagaaccaggctcatcgag
ggaatgctcgagaggatcgcggagaaaacgcacggcttcgtcggtgcagaccttgccgct
ttggcgagagaggccgcaatggtcgtcctcaggaggctcataaacgagggcaagataagc
cccgagcacgagaagataccccctgaggtcctccaggaactccgcgtgaggaaggctgac
ttctacgaggccctcaagatggtggacccaagcgcgctcagggaagtgctcatcgagatg
ccgaacgtccgctgggaggacataggcggcctccaggaggtaaagcaggagctcaaagag
gccgtcgaatggccgatgaaatatcccaaggcgttccagaggctcggcattgaaccgccg
aggggtgtgctcctctacggcccgcccggaacgggcaagacgctcctagccaaggccgtg
gcgacggagagcgaggccaacttcatcggaatccgcggcccggaggttctcagcaagtgg
gtgggcgagagcgagaagcgcgtgagggagatattcaggaaggcccgccaggccgcgcca
acggtaatcttcatcgacgagattgacgcgatagcccccgccaggggtatggaaggcgac
cgcgttacggacaggcttatcaaccagctcctcaccgagatggacggcatagagcgcaac
agcggcgtggtcgttatagccgccaccaacaggccggacatcctcgacccagctctgctg
agaccaggaaggttcgacaggttgatactcgtccccgcccccgatgagaaggccagactg
gagatactcagggtccacacgaaacgcgtacccctggcaggggacgtcaacctcagggag
ctcgcaaagaagaccgagggatacagcggtgcggacatagaggccctcgtgagggaagcg
gccctgctggcaatgcgcaggataatgggggagctgccggtggagctggttgaggaggag
agcgaggagttccttgagaggctcagggtttccaggaaggacttcgaggcggccctcaag
aaggtacgcccgagcataacgccctacatgctcgagtactacaggaacttcgatgaaaac
aggaggaagatgggcgagaagaaaactgaggggcccgactactacaccttctga
DBGET
integrated database retrieval system
