KEGG   Thermococcus indicus: FH039_12015
Entry
FH039_12015       CDS       T07099                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tic  Thermococcus indicus
Pathway
tic03030  DNA replication
tic03410  Base excision repair
tic03420  Nucleotide excision repair
tic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FH039_12015
   03410 Base excision repair
    FH039_12015
   03420 Nucleotide excision repair
    FH039_12015
   03430 Mismatch repair
    FH039_12015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tic03032]
    FH039_12015
   03400 DNA repair and recombination proteins [BR:tic03400]
    FH039_12015
Enzymes [BR:tic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FH039_12015
    6.5.1.6  DNA ligase (ATP or NAD+)
     FH039_12015
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FH039_12015
DNA replication proteins [BR:tic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FH039_12015
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FH039_12015
DNA repair and recombination proteins [BR:tic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FH039_12015
   NER (nucleotide excision repair)
    Other NER factors
     FH039_12015
   MMR (mismatch excision repair)
    Other MMR factors
     FH039_12015
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Tcp10_C
Other DBs
NCBI-ProteinID: QDA32586
UniProt: A0A4Y5SNT3
LinkDB
Position
complement(2220606..2222285)
AA seq 559 aa
MKYAELADLYRRLEKTTLKTLKTRFVSDFLKRTPDELLEIIPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEREIENSVRDTGDLGESVALALKKKKQKSFFSQPLTIKRVYDTF
VKMAEASGQGSQDRKLKYLANLFMDAQPEEGKYLARTVLGTMRTGVAEGLMRDAIASAFG
VKAELVERAYMLTSDFGYVARVAKLEGNDGLSRVRIQVGKPIRPMLAQNAANVKEALVEM
GGKAAFEIKYDGARVQVHKDGDRVVIYSRRLENVTKSIPEVVDAVLESVKAEEAIVEGEL
VAVGEGGKPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVLYVDGEGLIDTPFSERRKR
LEEVVSPGKRIRLAEQLVTDNVDEAETFYQRALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIIGAEWGEGRRAHFLGSFLVAAFDPHSGNFVPVGKVGSGFTDEDLAEFT
RMLKPLIVREEGKYVEIEPKVVIQVTYQEIQKSPKYESGFALRFPRYVALREDKSPEEAD
TIERIAQLYEFQERFKAKR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaaatacgccgaactggccgacctctacaggcgtctggagaagacgaccctcaagacc
cttaagaccagattcgtctccgattttctaaagagaacccccgatgagctccttgagata
ataccgtacctcattctcggaaaggtcttcccggactgggacgagagggagcttggagtg
ggtgagaagctcctcataaaggccgtctctatggctaccggggttcctgagcgcgagata
gagaactccgtgagggacaccggcgacctcggtgagagcgttgccctggccctgaagaag
aaaaagcagaagagcttcttctcccagccgctgaccataaagcgcgtttacgacaccttc
gtgaagatggccgaggccagcgggcagggaagccaggacaggaagctgaagtacctggcc
aaccttttcatggacgcccagccggaggagggcaagtacctcgccaggactgtccttgga
accatgcgcaccggtgttgcggagggactcatgagggacgccatagcgagcgccttcggc
gtcaaggccgagctcgtggagagggcatatatgctcacgagcgacttcggctacgttgcg
agggtggccaagctcgagggcaacgacggcctctcaagggtccggattcaggtgggcaag
cccataaggccgatgctcgctcaaaacgcggccaacgtgaaggaagctctggtggagatg
ggcggaaaggcggcgttcgagattaagtacgatggtgccagggttcaggtccacaaggac
ggtgacagggtcgtcatctactcccgccggctggagaacgtgacgaagtcaattcccgag
gttgttgacgccgtcctggagagcgtaaaagctgaagaggccatcgtggagggtgaactc
gttgccgtcggcgagggtgggaagcccaggcccttccagtatgtgcttaggcgtttcagg
agaaagtacaacatcgaggagatgatcgagaagatccccctcgagctgaacctcttcgat
gtcctctacgttgacggtgaggggctgatagacacacccttctccgagcgcaggaagagg
ctggaggaggtggtatctccggggaagaggataaggctggcggagcagctggtcacggat
aacgtcgatgaggcggagaccttttaccagcgcgcccttgagctcggccacgaggggctg
atggcgaagcgcctggattcggtttacgagcccggaaacaggggcaagaagtggctcaag
ataaagcccacgatggaggacctcgacctcgtcataataggtgcggaatggggcgagggg
aggagggcgcacttcctcggctccttcctggttgcggccttcgacccgcacagtggaaac
ttcgtccccgtcgggaaggttgggagtggtttcaccgacgaggatctggccgagttcacc
aggatgctcaagccgctcatagtccgtgaggagggcaagtacgtcgagatagaaccgaag
gtcgttatccaggtcacctaccaggagatacagaagagcccgaagtacgagagcggcttt
gcccttcgcttcccgcgctacgtcgctttaagggaggacaagagtcctgaggaagccgac
actatcgagcgcatagcccagctctacgagttccaggagaggttcaaggcgaagaggtga

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