Thermodesulfatator indicus: Thein_0034
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Entry
Thein_0034 CDS
T01546
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
tid
Thermodesulfatator indicus
Pathway
tid02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tid00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Thein_0034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tid03021
]
Thein_0034
Transcription machinery [BR:
tid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Thein_0034
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
K-box
PFam54_60
Motif
Other DBs
NCBI-ProteinID:
AEH43919
UniProt:
F8A8B5
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All DBs
Position
complement(36529..38211)
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AA seq
560 aa
AA seq
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MADLTKDLSVLEELKEKGVRKKSVLRSFSMPIEEVADLVESLDIGTKVEEASLEEIAEEV
TKDVSRSDPVKLYLKEMGQARLLSREEEVIVAKIIEQGEHEALKVAIKARGVVQEIFNIC
EEFFAGQLKAREIVRDLDDCFSDNESDIEQRSQGLQGILLEIRCIARDLLSLEEALDSSS
NKQAKARMRQRARKLREEILARLCQLRLDKRCLERIIKPIIDGYEKITKAHRDLKACERE
AGRSLSSLAVHFQKTNGHFSEIEKSAAKLGMDMDRFLNLRARYLLAQKAIEEAEKQTGLS
AKKLQSVARDLEHSLEKIRKAKDELVKANLRLVVSIAKKYTGRGLQFLDLIQEGNIGLMK
AVEKFDYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRASLQIYQET
GQEATPEQIAERLELPVEKVRKILKIAKEPISLETPIGEDEDSHLGDFIEDPSVPPPDQV
AISLSLIEQTRRVLSTLTPREEKVLRMRFGIGEKGEHTLEEVGKEFRVTRERIRQIEAKA
LRKLRHPSRSRKLRCFIKNV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcagacctcaccaaagacttaagtgtcttggaggagcttaaagaaaagggggtgcgg
aaaaagtctgtccttaggtcattttctatgcccattgaagaagtagctgacttggtggaa
agcctggatatagggaccaaggtagaagaagcctctcttgaagagattgccgaagaggtg
accaaagatgtttcccgctctgacccggtaaagctttacttaaaagaaatggggcaagcc
cgtcttttgagtcgcgaagaagaggtaatagtagccaaaattattgaacaaggagaacac
gaggccttaaaagtagccattaaggctcgtggcgtagtgcaagaaatattcaatatctgt
gaagaattctttgccggtcaacttaaggcccgcgaaatagttagagaccttgatgattgt
ttttctgataatgaatctgatatcgaacagcgaagccaaggtcttcaaggaattctgcta
gaaatacgctgtattgctagagacttgttgagcctagaggaagctctcgattcctcttct
aataaacaggccaaggcgcgtatgcgtcaaagagccaggaagttgcgtgaagaaatttta
gcccgtctttgtcaactgcgtcttgataagcgatgtctagaaaggataattaaacccata
attgatggctatgaaaaaattacaaaggcacatagagacttaaaagcctgtgaaagagag
gccggtcgctctctttcaagccttgcggtccattttcaaaagactaatggtcacttttcg
gaaatagaaaagtcagcggctaaactgggaatggatatggaccgcttccttaatctcaga
gcgagatatttactggctcaaaaggccatcgaagaggcagagaaacaaactggcctttct
gccaagaaattacaaagtgtagctcgcgacctagaacattcattagaaaagataagaaag
gccaaagatgagctggttaaggccaatctgagattggtggtttctattgccaaaaaatat
acaggccgcggtttacaatttctggacttaatccaggaaggaaatattggccttatgaag
gcggtggaaaagtttgattaccgccgcggttacaagtttagcacttatgccacctggtgg
ataagacaggccattacccgggctattgctgatcaggcccgcaccattcgtattcccgta
cacatgattgaaactataaacaagctagtaagggcttctcttcagatttatcaagagaca
ggccaggaagccacgcccgaacaaattgctgaaaggcttgaactgccagtagagaaagtt
cgcaagattctaaaaatagccaaagaacccatctctcttgaaacgcctattggtgaagat
gaagattcgcatttgggggatttcatcgaagatccaagtgttccccctccggatcaagtg
gctatttctctaagccttatagagcagacacgtcgagtactatccacccttacccctaga
gaagagaaagtattgcggatgcgttttggcataggtgaaaaaggcgagcatactcttgaa
gaagtaggtaaggaatttagggtgacgagagaaagaatcagacagatagaggcgaaggcc
ttgcgaaaattaaggcatccaagccgtagccgaaaattgcgctgttttataaaaaatgtt
taa
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