Thermodesulfatator indicus: Thein_0272
Help
Entry
Thein_0272 CDS
T01546
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tid
Thermodesulfatator indicus
Pathway
tid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thein_0272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tid03021
]
Thein_0272
03400 DNA repair and recombination proteins [BR:
tid03400
]
Thein_0272
Enzymes [BR:
tid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thein_0272
Transcription machinery [BR:
tid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thein_0272
DNA repair and recombination proteins [BR:
tid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thein_0272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AEH44156
UniProt:
F8A9V8
LinkDB
All DBs
Position
complement(287269..291372)
Genome browser
AA seq
1367 aa
AA seq
DB search
MEDLLSYFSKPKDPMNIKAIRLGLASPEKILEWSHGEVKKPETINYRTLKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGVICEKCGVEVIQSKVRRERMGHISLAAPVAHIWYLRSI
PSKIGALLDMTLKELERVLYFESFVVTESEIPEVPVGKVLNEEEYQNLLQAHGPKFKIGI
GAEAIKTILQNLNLEELSKELREEMAKTRSEAKRKKLGKRLRIVEALKESGNKPEWMILD
VIPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLMDLDAPDIIVRNEMRMLQ
EAVDTLFDNGRRGRPVTGPNRRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LRMHQCGLPKKMALELFKPFIYNWLEKNGHVTTIKSAKKMVEKEDPLVWDALDEIVKEHP
IMLNRAPTLHRLGIQAFEPILIDSKAIQLHPLVCVAYNADFDGDQMAVHLPLSVEAQTEC
RVLLLSTNNILLPASGIPVVYPTQDMVLGIFYITQERPFARGEGRIFANREEAILAYEEG
EVDLQAKVKVRMDGKLVETTVGRVLFSTIVPEEIKFEEYNKPLAKKALQQLIDLSYRRAG
AKKTVIFADKMKDMGYYFATKAALSICLDNMQIPAKKQQLLEEAEKKVREIWEQYQEGLI
TDGERYNKVVDVWATVTEQVTEEMIKEMETKEYVSPDGKKKKKGPSGNPLYIMAYSGARG
SKDQIRQLAGMRGLMAKPTGEIIETPIKSNFREGLSVLEYFISTHGARKGLADTALKTAN
AGYLTRRLVDVAQDCTITEEDCHTIDGIEVGHLIEGGEIMEPVWDRVLGRVALEDVEDPV
TGEILIRANEEIDEKAAEKLREAGIEKVTIRSVLTCQSKYGVCAKCYGRDLATGRLVEIG
EAVGVIAAQSIGEPGTQLTMRTFHIGGTASRAAEQSEHRAQSQGIVKFINLRTVRTDRGY
LVAMNRQGEIAIITPDGREKERYPVVYGARILVEEGQKVNPGDLLVEWDPFTIPIITEVS
GRVKFGDIIEGVTVDERTDPITGKVSIIVREYKHTDYRPRISIKDERGRTVKIPGKGHAR
YLLPVGAILTVNEGDEVKAGDIIAKIPRETTKTKDITGGLPRVAELFEARKPKEFAIISE
IDGIVHFDKEIKGKRKLIIQPEVGDPKEYLIPKGKHIAVHEGDYVRAGEPLIEGSPNPHD
ILRVKGVKGLARFLVEEIQEVYRLQGVRINDKHFEVIVRQMLKKVKIREVGDTNFMLGEL
VDKTRFQEENERVLAMGGRPAVAEPLILGITKASLAVESFLAAASFQETTKVLTEASLAG
KVDYLRGLKENIIIGRLIPAGTGRVYYDMKEEQRAKKSPSGLSELTA
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaagatctcctttcctatttttccaagccaaaagatcccatgaatatcaaagcgata
aggcttgggcttgcttctccagaaaagattcttgaatggagtcacggagaagtcaagaaa
cctgaaaccattaactaccgtactttaaaaccagaaagagacgggcttttctgtgccaaa
atatttggtcctgttaaggactacgagtgtctctgcggaaaatataaacgcatgaaacac
cgcggtgttatttgtgaaaagtgtggtgttgaagtgattcaaagcaaagtgcgccgtgaa
cgcatggggcatataagtcttgcagccccggtggcccatatttggtatcttcggagtatt
cctagcaaaatcggggcccttcttgatatgaccttaaaagaacttgagcgcgttctttat
tttgaaagctttgtggttacggaaagcgaaattccagaggttccggtaggcaaagtttta
aatgaagaagagtatcagaatcttcttcaggctcatgggccgaagttcaaaattggcatt
ggagctgaggctataaagactatacttcagaatctcaacctggaggaactttccaaagag
ttgcgggaagagatggccaagacccgcagtgaggctaaacgcaaaaagcttggtaaacgt
ctgcgtatcgtggaagcccttaaagagtctgggaataaacctgaatggatgatacttgat
gttatccctgtaatcccaccggatttgaggccacttgtgccccttgaaggcggacgtttc
gccacctctgatttgaacgatctttatcgacgggttatcaaccgcaataatcggctcaaa
cgcttgatggaccttgatgctcctgacatcattgtgcgcaatgagatgcgcatgctccag
gaagcggtggacactttatttgacaacggccgccgtggacggcctgttacagggccaaat
cgcaggccgcttaagagtctttctgatatgctcaaaggtaagcagggccgtttccggcag
aacctccttggtaaacgggtggactactctgggcgttcggttattgtggtggggcctgag
ctcaggatgcaccagtgtgggcttcctaaaaagatggccttagagctttttaagcctttt
atctataactggcttgagaaaaatggtcacgtaaccaccattaaaagtgctaaaaagatg
gtggaaaaagaagatcccctggtctgggatgcccttgacgaaatcgtaaaagaacatccg
attatgctaaaccgtgctccaactcttcaccgccttggtattcaggcctttgagcccatt
cttatcgactctaaggccatacagcttcatccactggtgtgtgtggcttataacgctgac
tttgacggtgaccagatggccgttcatctgcctctttccgttgaagcccaaactgaatgc
cgggtgcttctcctttccaccaataacattttgcttccggcaagtggtattccggtggtt
tatcccactcaggacatggtacttgggatcttttacatcactcaggaacggccttttgct
aggggagaaggccgtatttttgccaacagagaagaggctattcttgcttatgaagaaggt
gaggttgatcttcaggccaaagtcaaagtgcgcatggacggcaagctggtagagaccacc
gtggggcgggtacttttttccaccattgtgcctgaggaaatcaagtttgaagaatacaac
aagcctttggctaaaaaggccttgcagcaattaattgacctttcctatcgtcgggctggg
gctaaaaagacagttatctttgccgacaaaatgaaagatatgggttattacttcgccacc
aaagcggccctttctatttgcttagacaatatgcagattccggctaaaaagcagcagctc
cttgaagaggccgagaaaaaagtccgcgaaatctgggaacagtaccaggaaggtcttatc
accgatggtgaaagatacaacaaggtagttgacgtctgggctacggtaacagagcaggtt
accgaagaaatgattaaagaaatggaaactaaagagtatgtcagcccggacgggaagaaa
aagaaaaaagggcctagtggaaaccctctttacatcatggcttactctggtgctcgtggt
tctaaagaccagattcgccagctggctggtatgcgtggtttgatggccaagcctactggt
gagattattgaaacgcctattaaatccaacttccgtgaaggtctttcggtgcttgaatac
tttatttccactcacggtgcgcgcaaaggtttagcagacacggctcttaagacggctaac
gctggttatcttactcgtcgtctggtggatgtggcgcaagattgcaccattactgaagaa
gactgtcacaccattgacggtattgaagtgggccacctgattgaaggtggtgaaattatg
gagcccgtgtgggatcgtgtgcttggccgtgtggctctggaagatgtagaagatcctgtt
accggtgaaatacttattcgtgccaatgaagagatcgacgaaaaagctgcggaaaaactc
cgagaggcaggtattgaaaaagtaaccattcgttcagtgcttacctgccagagcaaatat
ggtgtgtgtgccaagtgttatggccgagatcttgcaactggtcgtttagtggaaataggt
gaagcggtaggtgttatagcggcgcagtcaattggtgagccgggaacccagcttaccatg
cgtactttccacattggtggtacggctagtcgggcagctgagcagtcggaacaccgggct
caaagccagggtatagttaagtttatcaatttgcgtacagttaggactgacaggggctat
ctggtggctatgaatcgtcagggcgagattgctatcataactcctgacggccgcgaaaaa
gagcgttatccggtggtttatggagctcgcattcttgtagaagaaggccagaaggtaaat
cccggagaccttctagttgaatgggatccctttactattcccattattacggaagtttcc
gggcgagttaagtttggagacatcatagaaggtgttactgttgacgaaaggactgacccg
attaccggtaaggtaagtatcatagtgagggaatacaaacatacggactatcgcccacgt
atctctattaaagacgaacgcgggcgcaccgttaaaattcctggcaagggtcatgctcgt
tatcttctgcctgtaggtgccattcttacggttaacgagggcgatgaggttaaggccgga
gatattatcgctaagatccctcgtgagaccaccaagactaaagatattaccggtggtctg
ccaagagtggcggagctttttgaagcccgcaaacctaaagaatttgccattatcagtgaa
attgacggtatagtccattttgataaggaaattaaaggtaaaagaaagcttatcatccag
cctgaagtaggtgatcctaaagaatacttaatccctaaaggcaagcacattgccgttcac
gagggggattatgttagggcaggtgagcccttgattgaaggttctcctaacccgcacgat
attttgcgagttaaaggcgtaaaggggctcgcgcgctttctggtagaagagattcaggaa
gtttatcgtcttcagggtgtgcgcattaatgacaagcactttgaagttattgtgcgccag
atgctcaagaaggttaagattcgcgaagtaggtgataccaacttcatgctgggtgagctg
gtggataagacccgcttccaggaagaaaacgaacgtgtgctggctatgggagggcgtccg
gctgtagctgagcctttgattttaggaattaccaaggcctcgctggcggtggaaagcttt
ctcgcggcagcttctttccaggaaaccaccaaggtgcttaccgaagcctctctggccggc
aaggtggattatctacggggcttgaaggaaaatatcattattggacgcttaattcctgcg
ggaaccggtcgtgtttattacgacatgaaagaagaacaaagagccaaaaaatcgccttct
ggtctatctgaattgactgcttaa
DBGET
integrated database retrieval system
