Thermodesulfatator indicus: Thein_2168
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Entry
Thein_2168 CDS
T01546
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tid
Thermodesulfatator indicus
Pathway
tid03410
Base excision repair
tid03430
Mismatch repair
tid03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Thein_2168
03430 Mismatch repair
Thein_2168
03440 Homologous recombination
Thein_2168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tid03400
]
Thein_2168
DNA repair and recombination proteins [BR:
tid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Thein_2168
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Thein_2168
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thein_2168
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PhoU
Motif
Other DBs
NCBI-ProteinID:
AEH46016
UniProt:
F8ADQ8
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Position
2248260..2249963
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AA seq
567 aa
AA seq
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MKKDPFWVVAPLNRELTLKLASELELPPLLIHILLTRGLNDPHEIYRHLNPKLSDFPDPF
LLEDMEIAVKRLIKAIQTRENIAIYGDYDVDGTTGAAIVYLFLKELGLEPQVIFPHRERD
GYGLHPHLVASLKEKGITLLISVDCGISAYEACQVAREKGLDVIITDHHEVPEKLPEALA
VINPKRRENRYPFKELAGVGVAFALLRALRQRLYEEGFFSKSPPKLKSYLDLVALGTVAD
IVPLFGENRLIAWFGLEELKQSKRPGIKALKKLTGLENGRLDTNSIMFRLAPRINAAGRL
KEAMLAFKLFITEDEEEAQNIAEELHQLNTKRQQIEDRILKEALSQIEKNLGFDRLSYVL
ASEDWPPGVIGIVASRLQETFYRPVILLSLKDGLARGSGRSIPEINLYQCLADCCQHLKA
FGGHPAAAGLKILEKDIEAFAKEFEEIVKARLDGKIPKPRLQLDAWVRVKHILDPCFLEN
FMKLEPFGPGYPEPLFGLRNFQVRNISLVKEKHLKFFIWQEGVGLEAVAFRFGNSIPETI
KALAGNLEITSFQGRNYLQLRIKDLKN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaccccttctgggtggtagctccacttaatcgagaactcactttaaaattg
gccagcgaactcgagttacccccccttttaattcatatcctgctaacacgcggattaaat
gacccgcatgaaatttatcgtcatttaaatcccaaactttcagactttccagatcctttc
cttctagaggacatggaaatagcggtaaaaagattaatcaaggctatccaaacccgggaa
aacattgctatttacggtgactatgatgtagacggcactactggtgctgccattgtttat
ctttttttgaaagaacttggacttgagccgcaggtcattttccctcatcgcgaaagagat
ggttatggactccaccctcacctggtagcttccctcaaagaaaaaggtataaccctttta
atctcagttgattgtggcatcagtgcctacgaagcctgtcaggttgcccgggaaaaaggg
cttgatgttattattaccgaccaccacgaagttccagaaaaactgccagaagccttagcg
gttattaaccccaaaagaagagaaaatcgctatccctttaaagagcttgccggagtaggc
gtggcctttgcccttttacgggcccttagacaaaggctctacgaagagggatttttctcc
aagagcccaccgaagcttaaaagttatcttgacctggtagctttgggtactgtcgccgat
atcgtacccttgtttggtgaaaatcgtctaattgcctggtttggactggaagaactaaaa
caaagcaaacgaccggggattaaagcccttaaaaaactaacgggccttgaaaacggccgc
ttagataccaacagcattatgtttcgcctggccccgcgaataaacgctgctggtcgttta
aaagaggctatgcttgcttttaaactttttattacggaggatgaagaagaggcccaaaat
attgctgaagaactccaccaattgaacaccaaaagacagcaaatagaagatcgcatttta
aaagaggccctttcccaaatagaaaaaaatctcggttttgaccgcttatcttatgtgctt
gccagtgaagactggccacccggcgtaattggtattgtggcttcaaggcttcaggaaact
ttctatcgaccagtaattttgctttcattgaaagacggacttgcccgaggttctggccga
agtataccagaaataaacctttatcagtgcttggcagactgctgtcagcatttaaaagcc
tttggcgggcatcccgcagccgctggccttaaaatacttgaaaaagacatagaagccttt
gccaaagagtttgaagaaatagtcaaagcgagacttgatggaaaaattcccaaaccccgt
ctccaattggacgcttgggtcagagtaaaacatattcttgatccctgttttttagaaaat
tttatgaagctcgaaccttttggtccgggataccctgaacctctattcggtttgagaaac
tttcaagtaaggaatatatcccttgtcaaagaaaaacacttaaaattttttatatggcag
gaaggcgttggccttgaagcagtagcttttcgttttgggaattccatccctgaaaccata
aaagcccttgcgggaaaccttgaaattacaagctttcaagggagaaattatttgcaatta
aggattaaagacctgaaaaattaa
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