Thioploca ingrica: THII_0176
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Entry
THII_0176 CDS
T03616
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tig
Thioploca ingrica
Pathway
tig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
THII_0176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tig03400
]
THII_0176
Enzymes [BR:
tig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
THII_0176
DNA repair and recombination proteins [BR:
tig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
THII_0176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
SLFN-g3_helicase
UvrD-helicase
AAA_22
nSTAND3
PhoH
UvrD_C
AAA_7
DEAD
AAA_16
T2SSE
C9orf72-like
AAA_28
Motif
Other DBs
NCBI-ProteinID:
BAP54473
UniProt:
A0A090AAG6
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All DBs
Position
194673..196451
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AA seq
592 aa
AA seq
DB search
MDIPTTIKQLYKQGIFSDLDIYFAQFILTLANSTNNEELLLSSVLVSHLTAQGHTCLDFT
VWADQLFPPFSEPGMNTLHCPHLAPWLAALQSCNVVGSPGDYAPLILEQYRLYLYRYWDY
EQQLVTQIRIRTHRQLIHVNYGILEAGLSHLFPDKNQSPTDKQQQAALTAVLHPFVVISG
GPGTGKTATIIKILVLLLEQNLNLTIALAAPTGKSAARLQEIIGQTLPHLNCADHIKSAI
PREAYTIHRLLSKQFISPSFLSDTAHLLPYDVVIIDEASLVDLALMTQLAQAIPPSSRWI
LVGDKDQLASVEAGTVLGDICEASCSSPSHFLQNQIVFLDKSYRFSENSGIESLAQAVNQ
GQADKALQILKAENYPQVNWYPLGIPGNLPIQLIETIVTAFQHGLAANQPEIILQQLEQI
KILCATRWGSHGVVAINRRVEEALSKRGLIRTESTWYHGRPIIITRNDYTLKLFNGDIGI
ILRDAHSQQKLRAFFPRVEPGQYRCFWPNRLPEHETVYAMTIHKSQGSEFNQVLIILPHQ
LSPLFTREWLYTGITRARHSVSIWGDEKIFKAMVSRKMNRVSGLYEKLAQAD
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggatatccccacaaccattaaacaactttataaacaaggtattttttctgatctcgat
atctattttgcccagtttatactgactcttgccaatagtactaataatgaggaattattg
ttaagttcagtactggtcagtcatttaaccgcacaagggcatacctgtttagatttcacg
gtatgggctgatcaattatttccgcctttttcagaaccgggtatgaatactttacactgt
cctcatcttgcaccttggttagcggctttacaaagttgtaacgtggttggttctcctgga
gattatgcaccacttattctcgagcagtaccgtttatacttgtaccgttactgggattat
gaacagcaactcgttacccaaatccgaattcgcactcataggcaacttattcacgttaat
tatggcatactagaagccggtttatcacatttatttcctgataaaaatcaatcaccaaca
gataaacaacaacaggctgcgttaactgcggtattacacccttttgtggttatttctgga
ggacctggtactggtaaaaccgcaacgattattaaaatcttagtcttattgctagaacaa
aatttgaatttaacgattgctttagccgcaccgaccggtaaatcggctgctcgtttacag
gaaataatcgggcaaacattaccgcatttaaactgtgcagaccacattaaatcagcgatc
cctcgagaagcttatacgattcaccggttattaagtaaacaatttatttcaccctccttt
ttaagcgataccgctcacttattaccttatgatgtggttattattgatgaagcttcccta
gttgatctcgctttgatgactcagttagcccaagcgataccaccatcatcgcgttggatt
ttagtaggcgataaggatcaactggcttctgtagaagcgggtacggtgttaggtgatatt
tgtgaggccagttgttcttcaccatctcatttcctgcaaaaccagatcgtttttttagat
aaaagttatcggtttagcgaaaacagtggaatagaatcattggcacaagcggttaaccaa
gggcaagcggataaagcattgcaaattttaaaagccgaaaattatccacaggtgaattgg
tatccattaggaataccaggaaacttacccattcaactcattgaaaccatagtaaccgct
tttcaacatggcttggcagccaatcaaccggaaatcatcctccaacaattggaacaaatt
aaaattttatgcgctacccgctggggtagtcatggtgttgtagccattaatcgccgagta
gaagaagcattgagcaaacgcggattgatacgtactgaatcaacctggtatcacggtcgc
cccattattatcactcgtaatgactatacgttgaaactttttaatggtgatatcggtatt
attctaagagatgcccattcccagcaaaaattacgcgcttttttccccagagtagaacca
ggacaatatcgttgtttttggcctaaccgtttacctgaacacgaaacagtctatgcgatg
accattcataaaagtcaaggctctgaatttaatcaagtgttaataattcttccccatcag
ctttcgccactattcactcgagaatggctttatacgggcattactcgtgcccgacatagt
gttagcatctggggtgatgagaagatctttaaagcaatggtatcccgcaaaatgaaccgt
gtttctgggttatatgaaaaattagcccaggctgattaa
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