Thioploca ingrica: THII_0181
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Entry
THII_0181 CDS
T03616
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tig
Thioploca ingrica
Pathway
tig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THII_0181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tig03021
]
THII_0181
03019 Messenger RNA biogenesis [BR:
tig03019
]
THII_0181
Transcription machinery [BR:
tig03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THII_0181
Messenger RNA biogenesis [BR:
tig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THII_0181
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
BAP54478
UniProt:
A0A090AAG9
LinkDB
All DBs
Position
202415..203677
Genome browser
AA seq
420 aa
AA seq
DB search
MTMNLTALKKQTATDLIQIAQDLNLEGTARSRKQDVIFALLKAHAKKGEDIYGDGVLEIL
QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNE
INFESPEQAKNKVLFENLTPLFANERLNLELGNGSTEDLTPRIIDLIAPIGKGQRSLIVS
PPKSGKTMMLQNIAHSIATNHPECYLMVLLIDERPEEVTEMMRSVRGEVISSTFDEPATR
HVQVAEMVIEKAKRLVEHKLDVVVLLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPK
RFFGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNNEIHLDRKIAEKRIYPAI
NINRSGTRREELLVSQEELQKVWILRKLLHPMEEIAAMEFLLDRLKVTKTNSEFFDSMKR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgaatttaacagcacttaaaaaacaaacagccactgatctgatccaaattgct
caagatcttaatttagaaggaactgctcgttcacgtaaacaggacgtcatttttgcccta
ttgaaagcacatgcgaaaaaaggggaagacatttatggtgatggtgttttagaaattctt
caggatggttttgggtttctacgttctgctgatagttcttacctcgctggtcctgatgat
atttatgtttctccgagtcaaattcgtcgctttaatttacgaacgggcgataccgtcgcc
gggaaaatccgtcctcctaaagaaggagaacgttattttgccttgttaaaagttaatgaa
attaattttgaatcaccagaacaagctaaaaataaagttttatttgaaaacttaacgcca
ctatttgctaatgaacgcctgaatttagaattaggtaatggtagcaccgaagatttaacc
cctcggatcattgatttaattgcaccgattggtaaagggcaacgtagcttaatcgtctca
ccaccaaaatcaggtaagacgatgatgttacagaatattgctcattctatcgccaccaat
catcccgaatgttatctgatggtgttactcattgatgagcgaccagaagaagtcacggaa
atgatgagatcggtacgtggtgaagtgatttccagtacttttgatgaaccagcgactcgg
catgtgcaagtggccgaaatggtcattgaaaaagccaagcggctcgttgaacacaagttg
gatgtcgtcgttttattagattcaattacccggttagctcgagcttataacaccgtggtt
ccttcttcgggtaaagtattaaccggtggggttgatgccaacgccctccatcgacccaaa
cgcttttttggagcggcacgtaatattgaagaaggtggcagtttaaccattatagcaacg
gccttgatagataccggatcccgcatggatgatgttatttacgaagaatttaaaggcacg
ggcaataatgaaattcacttagatcgtaaaattgctgaaaagcgtatttatccggcgatt
aatattaatcgttctggaacacgccgagaagaactactggtttcccaagaggaactacag
aaagtttggattttgcgcaaattattacatccgatggaagaaattgccgcgatggaattt
ttactcgatcgccttaaggtgactaaaaccaatagtgaattttttgattcgatgaaacgg
taa
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