Thioploca ingrica: THII_1181
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Entry
THII_1181 CDS
T03616
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tig
Thioploca ingrica
Pathway
tig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THII_1181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tig03019
]
THII_1181
03016 Transfer RNA biogenesis [BR:
tig03016
]
THII_1181
Enzymes [BR:
tig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
THII_1181
Messenger RNA biogenesis [BR:
tig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THII_1181
Transfer RNA biogenesis [BR:
tig03016
]
Prokaryotic type
tRNA degradation factors
THII_1181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BAP55478
UniProt:
A0A090ACK9
LinkDB
All DBs
Position
1411371..1413464
Genome browser
AA seq
697 aa
AA seq
DB search
MKDMILYKKTLQYGQHSLTLETGEIARQASGAVMVSMGDTIVLVTVVGTKETNIEKDFFP
LTVDYQERSYAAGRIPGSFSKREGRPTEKETLTSRLIDRPLRPLFPEGFNHEVQIIATVM
SLDPEIDPDIPALIGSSAALAISGIPFNGPLGAARVGYINNEYVLNPTLNQLNHSDLDLV
VAGTSSAVLMVESEAKELSEEIMLGAVLFGHDQIQPLIKAIQELAITATATPWDWQPKSL
DNQLNQQIAALAELKLREAYQIYDKLARRDCLASIRQEVIAQLTSVDSPPWTADQILSAL
EKQEKQMVRSNIITGKPRIDSRDNRTVRPITIRTGVLPRTHGSALFTRGETQALVVTTLG
TERDAQIIDALEGEYKEGFMLHYNFPPYCVGEIGRIGTPKRREIGHGRLARRGIQAVMPS
IQEFPYSIRLVAEITESNGSSSMATVCGSSLALMDAGVPIKAPVAGIAMGLIKEGDQFVI
LSDIMGDEDHLGDMDFKVAGTTKGITALQMDIKIEGITREIMAVALEQAKAGRLHILSIM
YETLDKPRSEMSKHAPRIITFQIKPDKIREVIGKGGITIRAITEDTGATVDISDDGIVKI
ASVDLMAGQEARRQIELITSDIEVGRVYEGRVVKLMDFGAFVTIPPGRDGLVHISQISEE
RVEKVSDKLKEGETVRVKVLEIDKQGRIRLSMKAVNS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatatgatcctgtataaaaaaacattgcaatatggtcaacatagcctcactctt
gaaaccggtgaaatagcacgacaagcttccggtgctgtcatggtcagtatgggggatacc
atcgtactggtgacggtcgtcgggactaaagaaaccaatatagaaaaagatttttttccc
ttgacagtcgattatcaggaacgttcctatgcggctggtcgaattccaggcagtttctcc
aaacgtgagggacgacccactgaaaaagaaaccttaacttcccgactaatcgatcgccca
ttgcgtcccttatttccggagggatttaatcatgaagtccaaatcattgcgactgtcatg
tctttggatccggaaattgatccggatattccggctttgattggttcttctgctgcttta
gccatttctgggataccctttaatgggcctttaggcgccgcacgagtgggttatattaat
aatgaatacgtgcttaatccaacgcttaaccaacttaatcattccgatttagatttagtt
gtcgccgggacctcatcagcagtgctcatggtggaatcagaggcaaaagagttaagtgaa
gaaatcatgttaggtgcggtcctgtttggacatgaccagatacaaccgcttattaaagct
atccaagaattagctataaccgcaaccgcaactccctgggattggcaaccgaaatcgcta
gataaccagcttaatcagcagattgccgcattggcagagctaaaattacgcgaggcttat
caaatttacgataagttagcacgtcgtgactgtttagccagcattcgccaagaagtgata
gcgcaactgactagcgtagactcgccaccatggactgccgatcagattctgagtgcccta
gaaaaacaagaaaaacagatggtgcgaagcaatattattaccggtaaaccgcggattgat
agtcgtgataaccgcacggtgcgtcccattacgattcgtaccggcgtattgccaagaaca
catggttcggctttattcacccgtggtgaaacccaagcactcgtggtaacaactctaggc
actgaacgtgatgcccaaattattgatgctctagagggagaatataaagagggtttcatg
ttgcattacaatttcccaccctactgtgtgggcgaaattggacgcataggaacacccaaa
cgacgtgaaattggtcatggacgcctagcaagacggggtatacaagcggttatgcccagt
atccaagaatttccttattcaatccggttggtggcagaaattaccgagtcgaatggttcg
agttcgatggcaaccgtttgtggttccagcttagccttgatggatgctggtgtgccgatt
aaagcgccggtggccggtattgcaatggggctgattaaagaaggcgaccaatttgtcatc
ctctccgatatcatgggtgatgaagaccatttgggtgatatggacttcaaagtggccggg
acgactaaagggatcactgccttacaaatggatatcaaaattgagggcattacccgtgaa
attatggcagtggctttagaacaagcgaaagccggtcgcttacacatcttaagcatcatg
tatgaaacccttgataaaccccgcagtgaaatgtcaaaacatgcaccacgtatcattacc
ttccagattaaacctgataaaatccgcgaagtgattgggaaagggggtattactattcgt
gccattactgaagacactggagccacagtcgatattagtgatgatggtatcgtgaaaatt
gcttcggtagatttaatggctggacaagaagcacgtcgccaaattgaactgattacctcg
gatatcgaagtgggtagagtttatgaaggtagagtagtcaaattaatggattttggcgct
tttgtaaccattcccccaggaagagatggcttagttcatatttcccaaatttcagaggaa
cgagttgaaaaggtcagtgataaattaaaagaaggggaaactgtccgagttaaagtactg
gaaatagataaacaagggcggattcgcttaagtatgaaggcagttaatagttaa
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