Thioploca ingrica: THII_1217
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Entry
THII_1217 CDS
T03616
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tig
Thioploca ingrica
Pathway
tig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THII_1217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tig03019
]
THII_1217
03400 DNA repair and recombination proteins [BR:
tig03400
]
THII_1217
Enzymes [BR:
tig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THII_1217
Messenger RNA biogenesis [BR:
tig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THII_1217
DNA repair and recombination proteins [BR:
tig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THII_1217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAP55514
UniProt:
A0A090AEV5
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All DBs
Position
1456031..1457851
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AA seq
606 aa
AA seq
DB search
MTFSSPLEILQTVFGFSQFRGEQENIINHVLAGGDALIFMPTGSGKSLCYQIPALLRPGI
AIVISPLISLMQNQVSALQQLGIHAATLNSSLPPAEAYRVTQQLRQNQLDILYVSPEKVV
TPRFLEFLETTPIALFAVDEAHCISQWGHDFRPEYIQLAILPERFPTVPRLALTATADIP
TQHDISHYLALKSAKVFKTSLNRPNIGYRVTLRTSQLRQQLLQFLVQHRGEAGIIYCLKK
KTVQSIAQWLSQQGWLALPYHAELDSEIRQHHLQRFLYEEGVIVVATIAFGMGIDKPNVR
FVVHLDLPKSLEEYYQQTGRAGRDGLAAEAWMVYGLQELIMLKKIFAAEADNERNRVRKH
KLEAMLGYCETTNCRRQVLLTYFGEQFPSSCGNCDTCLEPTATWDGTQAAQKALSCVYRT
GQRFGVHYLIEILLGKTNERIKKYRHDRVSTFGIGQDLNAEQWHSVFRQLLAHGFVTIDM
NGHGSIQLTEKARPLLRGEHPLYLRKEISLSPKRAKKYHRSLPPMLVDQEKTLWESLRAK
RLELAQAENIPPYMIFHDSTLKAMVQYRPLNLEAFSRLSGVGTHKLNRYGSIFIEVLQNH
IQQESP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcatcacctttagaaattttacaaacggtctttggtttctcccaatttcgt
ggtgaacaagaaaatattatcaatcatgttctcgccgggggtgatgcgctcatatttatg
cccacggggagtggtaaatctttatgttatcaaataccggcactcctccgacctggaatc
gctatcgttatttctcccttgatttctttaatgcaaaaccaagtcagtgcgttacagcag
ttgggtatccacgccgctaccctcaattccagtttaccgccagcggaagcttatcgagta
acccagcagttacgccaaaatcaattggatattctctatgtttccccggaaaaagtcgtt
acccctcggtttctcgaatttcttgaaacgactccaattgctttatttgccgtcgatgaa
gcgcattgtatttcgcaatggggacatgattttcgtcccgagtatatccagttagctatt
ttaccggagcggttcccgacggtgccacgtcttgccctgactgccactgctgatattcca
actcaacacgatatttcccattatttagctttaaaatcggccaaagtattcaagaccagc
ttaaatcgacccaatattggttatcgcgtcacgcttagaacatcacaattacgtcagcaa
cttttacagtttttggtacaacaccgaggtgaagccggtattatctattgcttaaaaaag
aaaacggttcaaagcattgcacaatggttatctcaacaaggttggttagctttaccttat
catgctgaactggattcagaaattcgtcaacatcatctccaaaggtttttatatgaggag
ggtgtcattgtagtcgcaaccatcgcttttggaatgggcatcgataaacctaacgttcgc
tttgtcgttcatttagatctacccaaaagtctagaagaatattatcagcaaaccggtaga
gccggacgtgatggcttagcggctgaagcgtggatggtttatggtttacaagagctaatc
atgctaaaaaaaatctttgctgccgaagcagacaatgagcgtaatcgagttagaaaacat
aaactagaagctatgctcggttattgtgaaactacgaactgtcgtcggcaagttttgctg
acttactttggcgagcaatttccttcttcttgtggtaattgtgatacttgcttagaaccg
acagcgacctgggacggtacccaagcggcgcaaaaagcgctctcttgtgtttatcgaacg
ggtcaacgatttggtgttcactaccttattgaaatattactgggtaaaactaatgagcgg
attaaaaaatatcgacacgaccgtgtcagtacgtttggaattggtcaagacttaaatgca
gaacaatggcattccgtttttcgccaattgctggcacatggttttgtaaccattgatatg
aatggtcatggtagtattcaactgactgaaaaagcacgtcccctgttgcgtggtgaacac
cctttatacttgcgtaaagaaattagtttatcgccaaaacgagctaaaaaataccaccgt
tctttacctccaatgctcgttgatcaggagaaaactttatgggaatccttgcgtgctaaa
cgtttagaattggctcaagcggaaaatattccaccttatatgatttttcatgacagtact
ttgaaagccatggtgcaataccgccctttgaatttagaagcattttctcgattatccggg
gttggaactcataaattaaaccgttatggttcaatttttattgaagttttacaaaaccat
atccagcaggaatcgccatga
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