Thioploca ingrica: THII_1245
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Entry
THII_1245 CDS
T03616
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tig
Thioploca ingrica
Pathway
tig03410
Base excision repair
tig03430
Mismatch repair
tig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THII_1245
03430 Mismatch repair
THII_1245
03440 Homologous recombination
THII_1245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tig03400
]
THII_1245
DNA repair and recombination proteins [BR:
tig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
THII_1245
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
THII_1245
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THII_1245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAP55542
UniProt:
A0A090AJ60
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All DBs
Position
1486728..1488482
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AA seq
584 aa
AA seq
DB search
MNKIIKRRPLPENINLPDHFHPVLRRVLAARQVSVATELDYGLQNLLPYTSLLGIETAVD
LLRDALIHQARILIIADYDADGATSCAVAMKALRQMGAQKVGFLVPHREKHGYGLTPEIV
ELAVTDSWLVNTAPGNAPDLLVTVDNGISSRDAVAIAKRYGMKVLITDHHSAPAQLPEAD
AIVNPNQPGDSFPSKSLCGVGVIFYVMMALRARLRDSGWFATQGITEPNLAQLLDLVALG
TVADVVSLDYNNRILIEQGLRRIRANRCCPGILALIQVAGRDQTHLVASDLAFYLGPRLN
AAGRMDDMSHGIVCLLSEEDASAGLHAQLLQNFNQERCGEEAKMQQEALVMIESLGDFQQ
LPVGLCLLDEQWHQGVVGILAARIKDRLHRPVIIFTRDKDEQIRGSGRSVPGVHIRDILA
SIAVQHPQMITRFGGHAMAAGITIPHCQFNAFQHQFDQAVRQHLAVEQLQGVILSDGALS
PEDLNLELAEQLRTLTPWGHHFPEPIFDGEFELLTYRILKDKHLKMQVRLGKGKQTIEVI
AFNSVNTHWPSQVNYIQLAYKLDVNHFRGFKNLQLRAEYVAVLG
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaattattaaacgtcgccccttaccggagaatattaatttaccggatcacttt
cacccggttctcagaagagtcctagcggctcgtcaggtatcggttgcaacggaattagat
tatggtttacaaaatttactaccctacacttcattgttagggatagaaactgcggtggat
ttactccgggatgctttaattcatcaagcgcggattctcatcatcgctgattacgatgcc
gatggtgccacgagttgtgcagtagcgatgaaagcattacgccaaatgggtgctcaaaaa
gttggctttttagtccctcatcgagaaaaacacggctatggtctaaccccagaaattgtt
gaattagcagtaactgattcatggctagtgaacaccgccccgggaaacgcacccgacctg
ctcgtaaccgttgataacggcatttctagccgcgatgcggtagcaatcgctaaacgatac
ggcatgaaagtattaatcacagatcatcattcagccccggcacaattgccggaagcggat
gctatcgtgaatccaaatcaaccaggtgattcctttcccagtaaaagcctgtgtggcgtc
ggcgtgattttttatgtgatgatggcattacgagcacgtttgcgggatagcggttggttt
gccactcaagggattactgaaccgaatttagctcagttgctggatctagtcgcattaggt
acggttgctgacgtggtgagtttggattacaacaatcgcattttaatcgaacaaggtttg
cggcgcattcgagctaatcggtgttgtccaggaattctggctttaatccaagtggctgga
cgggaccaaactcatttagtggcgagtgatttagccttttatttgggaccacgcttaaat
gcggccggacgcatggatgatatgtcgcatggcattgtttgtttgttaagtgaagaggat
gccagtgccggattgcacgcgcaattattgcaaaactttaatcaggaacgttgcggtgaa
gaagcgaaaatgcagcaagaagcattggtaatgattgagtcactcggtgactttcaacaa
cttcccgtgggtttatgtttactcgatgaacaatggcatcaaggtgtggttggtatttta
gcagcgcgaattaaggatcggctccaccgaccggttattatttttacgcgtgacaaggac
gagcagattagaggttcaggtcgctccgtaccgggcgtgcacattcgtgatattttagcc
agcattgcagtacaacatccgcagatgattactcggtttggtggtcatgctatggcggct
ggtataaccatacctcattgccaatttaacgcatttcaacaccagtttgatcaagccgtt
cggcaacatttagccgtggagcagttacaaggtgtcattttgagcgatggtgccttatca
ccggaagatctcaatttagaactagccgagcaactgcgcactttaacgccctggggacat
cattttcctgaaccgatttttgacggcgagtttgaattattaacttatcgtattttaaaa
gataagcatttaaaaatgcaggtacgcctaggaaaaggtaagcaaaccattgaagtaatt
gcttttaattcagttaatacgcattggcctagccaagtcaattacattcaacttgcttat
aaattggatgtgaatcattttcgtgggtttaaaaatttgcaattaagagcagaatatgtg
gcagttttaggataa
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