Thioploca ingrica: THII_2747
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Entry
THII_2747 CDS
T03616
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tig
Thioploca ingrica
Pathway
tig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THII_2747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tig03400
]
THII_2747
Enzymes [BR:
tig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THII_2747
DNA repair and recombination proteins [BR:
tig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
THII_2747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
DUF3638
RecG_dom3_C
Exog_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAP57044
UniProt:
A0A090AI71
LinkDB
All DBs
Position
complement(3307321..3310803)
Genome browser
AA seq
1160 aa
AA seq
DB search
MMTQHNYLSALNPIFTYKPQQRQNWGNLQGSSIGLVISQIAQQAPLMVITPDSLSAQHLV
EDIQFYAEPTLSLLSFPDWETLPYDHFSPHQDIISARLTTLYHFPEMVTGVLVLPVTTLM
HRLAPTDYVRANSLLITTKQSFHLENFRQQLELSGYRCVSQVIEHGEFAIRGSLLDLFPM
GSHFPYRIDLLDDEVDSIRQFDPETQRSQNVIHEVRLLPAREFPLTELAINHFRSQWRIE
FGGDPTRCSVYREMSNGLASAGIEYYLPLFFATTQTLFDYLPQHSVIVTLPGVLTAAEQF
WQEVNARYEQLRHDIERPILAPNKLFLQANQVFAEFKAYPHITLSADQTEPSHDIHFATL
APPRLPVEARAPQPLAAFKNFLQTFSGRVLIAAETTGRRESLLELLKNHGIIPTLVDNWL
AFLAADANLCLTVAPLEQGLVLEKLPAALVEKGISSLAVITETQLFGERVAQRRRRKKSI
QRDTEVIVRDLTELSIGAPVVHEEHGVGRYQGLITLEIDEMAAEFLQLEYANQDKLYVPV
SSLHLISRFTGMDPAHAPLHRLGSGQWEKAKRKAAQQVTDVAAELLDLYARRAARPGHIF
KVYSTEYQAFAQAFPFEETPDQQEAITTVLADMSSPQPMDRLICGDVGFGKTEVAMRAAF
VAVHDGQQVAILVPTTLLAQQHHQTFQDRFADWAIRVEQLSRFRSKKQQDETLTAVAAGQ
VDIVIGTHKLLQENIQFKQLGLVIIDEEHRFGVKQKERFKSLRAEMDILTLTATPIPRSL
NMALSNLRDLSIIATPPSRRLAIKTFVREWHAPSILEAILRELRRGGQVYFLHNDIETIE
TMAQDIEKLVPEARVKIAHGKMRERELERVMQDFYHRRCNVLVCTTIIETGIDVPSANTM
IINRADKLGLAQLYQLRGRVGRSHHRAYAYLIVPPRKLMTPDAIKRIDAIGALEELGVGF
TLATHDLEIRGAGELLGSEQSGHMQEIGYHLYTELLERAVAALKSGQQPDLERPLSQPLE
INLHSPALLPSDYLPDVHTRLIMYKRIANAPDLLALDDIQVEMIDRFGLLPEPAKALIKI
TELKFKAITLGIRKIDVGSKGGYILFDDKTPVEPITLVHLIKENPAHYQINKQNKLQFTL
ELPTFAERYQAVEKFLQQLR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgatgacccagcataattacttaagtgcgttaaatcctatttttacttataaaccgcag
caacgccaaaattggggaaatttacaaggcagtagtatcggcttagtcattagccaaatt
gcacaacaagcccctttaatggtgataacgccggattcactttcagcacaacatctcgtt
gaggatattcaattttatgctgagcccactttatctctactcagttttccagattgggaa
actttaccttatgatcatttttcgcctcatcaagatatcatttcggccagattaacgacg
ctgtatcattttccggaaatggtcaccggggttttggttttaccggtaaccaccttaatg
caccgacttgctcccactgattacgtgagggccaatagtttgctaattaccaccaagcaa
tctttccatttagaaaattttcggcaacaactggaattgagtggttatcggtgtgtctca
caagtgattgaacacggtgaatttgccatccgcgggagtttattagatttatttccgatg
gggagccattttccttatcggattgatttattggatgatgaagtcgatagtattcgccaa
tttgatccggaaacccaacgttctcaaaacgttatccatgaagttcgattgctaccagcc
cgcgaatttccacttaccgaactggctattaaccattttcgtagccaatggcggattgaa
tttgggggcgatccaacgcgttgttcagtttaccgtgagatgagtaacggtttagcatcg
gctggaattgaatattatttaccgctattttttgcaaccacgcagactctgtttgactat
ttaccgcaacacagtgttattgttactttaccgggcgtgttaaccgcagccgagcagttt
tggcaagaagtcaatgcccgttacgaacaattgcgccatgacatagaacgcccaatcctc
gcacctaataaattatttttacaagctaatcaagtttttgctgaatttaaagcttatcca
catatcaccttgtctgcagaccaaacggagccaagccatgatatccattttgctaccctt
gctccacctcgattgccagtagaagcccgtgcaccccaaccactagccgcgtttaaaaat
tttttacaaaccttttctggacgggtactcatcgcggctgaaacgaccggcagacgggaa
agtttgttagaattactgaaaaatcatggcatcatccctactttagtcgataactggttg
gcatttttagccgctgatgccaatttatgcttaacggttgcaccgcttgagcaaggttta
gtcctcgaaaaattgccagccgctttagtagagaaaggcatttcgtccttagcggttatc
acggaaacacaactgtttggcgaacgcgtggctcaacgccgccgacgcaaaaagagtatt
caacgtgataccgaagtcattgttcgtgatctgacggaattgagtattggtgcaccggta
gttcatgaagaacacggtgtgggtcgttatcagggattgatcaccttagaaatcgatgag
atggcggcggagtttttgcaactagaatatgctaaccaagataaattatatgtcccagtg
tcctcactgcatttgatcagccgatttaccgggatggatcccgctcacgcacctttacat
cgcctcggttctgggcaatgggaaaaggctaagcgtaaagcagcacaacaggtaacggat
gtcgccgctgaattactggatctgtatgcccgacgtgccgctcgacccggacatatcttt
aaagtctattcaactgaatatcaggcgtttgcccaagcctttccctttgaagaaaccccc
gatcagcaggaagccattaccacagtactagcggatatgtcttcacctcaaccgatggat
cggctcatttgcggtgatgtgggctttgggaaaacggaagtagccatgcgagcggctttt
gtagctgttcatgatggacaacaagtcgccatactggtacccactactttgcttgcccaa
caacatcaccaaacttttcaagatcgatttgctgattgggcgattcgcgtcgaacaatta
tcgcgctttcgctctaaaaaacaacaagatgaaactttaacagcggtagcggctgggcaa
gttgatatcgtgataggtacgcataaattgttacaagagaatattcaatttaaacaattg
ggtttagtgattattgatgaagaacatcgttttggcgtaaaacaaaaagaacggtttaaa
tcattgcgggcagaaatggacatcttgactttaaccgcgaccccgattccgcggtcgtta
aatatggctttgtctaatttgcgcgatttatccattatcgctactccgccttcacgtcgg
ttagcgattaaaacgtttgtgagagaatggcatgccccttcgatcctcgaagcgatttta
cgagaattaaggcgcggtggtcaggtttattttctgcataatgatattgaaaccattgaa
accatggctcaagatatcgaaaaattagttccagaagcccgggtaaaaatcgcacatggt
aaaatgcgagaacgcgaacttgaacgggtgatgcaggatttttatcatcgtcgttgcaat
gtgttagtgtgtaccaccattattgaaaccgggattgatgtacccagtgctaacaccatg
attattaatcgagcggataagttaggattagcgcaattatatcaattacgtgggcgagtg
ggtcgttctcatcaccgtgcttatgcttatttaatcgtaccaccccgaaaactgatgacg
ccggatgcgatcaaacgtatcgatgcgattggtgctctggaagaactcggggtgggtttt
actttagcgacccatgatttagaaattcgtggtgccggtgaattgttgggcagcgaacaa
agcggacacatgcaggaaattggttatcatttgtacactgagttattagaacgtgcggta
gcggctctgaaatccggacaacaacccgatttagaacgtcctttatctcagccactggaa
atcaatttacatagcccggcattattaccgagtgattatttaccggatgtccacactcgc
ttgattatgtacaaacgcattgctaacgcccccgacttacttgccttagatgatattcaa
gtggaaatgatcgatcggtttggtttgttacccgaacccgctaaagcacttattaaaata
accgaacttaaatttaaagccattactttggggattcgcaaaatcgacgtgggcagcaaa
ggcggttatattttatttgatgataaaaccccggttgagccaattaccctcgttcatctc
attaaagaaaatccagcgcattatcagataaataaacaaaataaattgcaatttacgctt
gaattgcctacatttgcagaacgctatcaagcggtggaaaaatttttacaacagttgcga
taa
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