Thioploca ingrica: THII_3008
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Entry
THII_3008 CDS
T03616
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tig
Thioploca ingrica
Pathway
tig03030
DNA replication
tig03430
Mismatch repair
tig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THII_3008
03430 Mismatch repair
THII_3008
03440 Homologous recombination
THII_3008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tig03032
]
THII_3008
03400 DNA repair and recombination proteins [BR:
tig03400
]
THII_3008
Enzymes [BR:
tig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THII_3008
DNA replication proteins [BR:
tig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
THII_3008
DNA repair and recombination proteins [BR:
tig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
THII_3008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAP57305
UniProt:
A0A090APB1
LinkDB
All DBs
Position
3592030..3595491
Genome browser
AA seq
1153 aa
AA seq
DB search
MTSRFIHLHLHTEYSIIDGLIHIKPLVKAVRQAGMPACAVTDYSNLFALVKFYRAAQSEG
IKPIIGVDIHLYRDDDSVSQLVLLCQNEIGYRNLTRLVSRCYTEGQKNGVPYLHQTWLAG
ATDGLIALSGGREGDVGQALLAGHHHLAQQRLTEWQHLFPDRFYLELHRTGRAQEEEYLH
LSVELALNTATPVVATNAVCFLTTEDFEAHEIRVCIHEGKTLADPNRPRRYTPQQYLRTP
QEMAELFADIPEALENTWLIAQRCNLELTLGKNFLPDFPIPTGQTVEEYFRHQARLGLEQ
RLTVLFDKTNEAFAQQRQPYDQRLTTELDVILQMGFPGYFLIVADFIQWAKDNQIPVGPG
RGSGAGSLVAYALGITDLDPLHYDLLFERFLNPERVSMPDFDIDFCMEGRDQVINYVAER
YGRDRVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDKIAKLIPFELGITLDKALESEELR
VRYEQEEEVHALIDMARKLEGITRNPGKHAGGVVIAPSVLTDFTPLYCEPDNTDLMTQFD
KGDVETVGLVKFDFLGLRTLTIIKWALATINRFTDQPVDITKIPLDDSETYELLKRGETT
AVFQLESAGLKKLIRQLRPDCFEDVIALVALYRPGPLQSGMVEDFINRKQGRAKVEYPHP
DLEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKNPQEMAKQRTVFVEGA
VARQVNAELANSIFNLMEYFSGYGFNRSHSCAYALLAYQTAWLKAHYPAAFMAAVLSADM
DNTDKLVTLISECRAMKLQILLPHINLSDYPFTVEDNDNYAIRYGLGAIKGAGESALSGI
LAERAQNGRFRDLFDFCRRIDLRKASRRVLEALINAGALDELGPSRSVLMASLETAIKLA
ERQATDSAIGQNDLFALPKNTQPTLIEESTHFITSELEWSETERLNRERDSLGHYLSGHP
IKPYLAELTQLTHHRLAEVRPTNHKQTIRIAGWVTDLRINTKRGRIAFISLDDSTAQLEV
KVYSELYTKVENLLALAKDSLLIVEGEVRTDDYNGGQMMIAENIFTLESARENYASRLEI
TITTPQANITLGKQLLALLTSYRHGRCAVLIHYHHVEAKVDLVLGKEWRIQPQWALLKQL
EELVGKNGVKVIY
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacttcacgttttattcatctacatttacacaccgaatactccatcatcgatgggtta
attcatattaaaccactcgtcaaagccgtgcggcaagctgggatgccagcctgtgcagtg
acggattatagtaatttgttcgccttggttaaattttaccgtgctgcccagtcagaaggg
attaaaccgattatcggtgtcgatatccatttgtatcgggatgatgactcggtctcgcaa
ttggtattgttatgccaaaatgaaattggttatcgtaatctgactcgtctagtgtcacgc
tgttataccgaaggacaaaaaaatggtgtgccttacttacatcaaacttggttagcgggc
gccactgacggtttaatcgcactctctggtgggcgtgagggagatgtcggacaagctttg
ttagccggacaccaccatttggcacagcagcggttaaccgaatggcagcacttgtttccc
gaccgtttttatttagaattgcaccgaaccggtcgtgctcaagaagaagaatatctgcat
ttatcggtggaactcgctttgaatacggcaacgccagtagtcgccactaacgcggtatgt
tttctgactaccgaagattttgaagcgcatgagatacgagtctgtatccatgaagggaaa
acgttagcggatcccaaccgccctcgccgctatacgccgcaacaatatttacgtactcct
caagaaatggcggaattatttgcagatattccggaagcattagaaaatacttggcttatc
gcgcaacgttgtaatttagaactcactttaggcaaaaatttcttgccggattttccgatt
ccaaccggtcaaaccgttgaagaatactttcgtcaccaagcccgtttaggtttagagcaa
cgcttaaccgttctttttgacaaaactaacgaggcatttgctcagcaacgccaaccttat
gaccaacggttaacgaccgagttagacgtgattctgcaaatgggctttccggggtacttt
ctcattgtagcggactttattcaatgggctaaagataatcaaattccggtcggtccgggt
cggggttctggcgccggttccttagtcgcttatgcgcttggtatcactgacttagacccg
ctgcattatgatctattgtttgagcgttttttgaatccagaacgcgtctctatgccagat
tttgacattgatttttgtatggaaggtcgagatcaagtcattaattacgttgcggaacgt
tatggacgcgatcgggtttcccaaattattacctatggcaccatggcagccaaagcggta
gtacgcgatgtggggcgagttctaggacatccctatggttttgtagacaagattgccaaa
ctgattccttttgaattaggtattactctcgataaagcattagaaagtgaagaattacgg
gtccgctatgaacaagaagaagaggttcatgctctaatcgacatggcacgtaaattagag
ggaattacccgtaatcctggcaaacatgcgggtggggtggtgatcgcaccgagtgtttta
actgattttaccccactgtattgcgaacccgataacaccgatttgatgacgcaatttgac
aaaggtgacgtagaaaccgtcggtttagtcaaatttgatttcttaggactgcgtaccctc
actatcattaaatgggcattggcaacgattaaccgtttcacagaccaaccggttgatatt
acgaaaattcccttagatgactcagaaacttatgaattattaaaacggggtgagactaca
gcggttttccaattagaatcagcgggtttgaaaaaattaattcggcaactgcgaccagat
tgttttgaagatgttattgccctagtggctttatatcgtcctggtccgctacaatcagga
atggtagaagatttcattaatcgcaaacagggacgagctaaagttgaatatccgcatccg
gatttagagccgattttaaaaccgacttatggcgttattgtttatcaagaacaagttatg
caaattgcgcaggtgttagccggttacacgttaggcggtgctgatttactccgccgagcc
atgggcaagaaaaatccgcaagaaatggcgaaacaacgcacggtttttgtagaaggtgca
gtggcgcggcaagtgaatgctgaattagccaattccatatttaatttaatggagtatttt
tccggttatggatttaatcgtagccatagttgcgcctatgcacttctggcttaccaaacc
gcttggctaaaagcgcattatccggctgcttttatggcggcggtattatctgccgatatg
gataataccgacaaactcgtcactttaatatcagaatgtcgggcaatgaaattgcaaata
ttactaccgcatatcaacttatctgattatccattcactgtagaagataatgacaattat
gccattcgttatggtttgggagctattaaaggggctggtgaatcggcgctatcgggtatt
ttagcggaacgtgctcaaaacggtcggtttcgggatctatttgacttttgtcggcggatt
gatttacgcaaagccagtcgccgcgttttagaagctttaattaatgccggcgctttagat
gaattaggaccaagtcgatcggtactcatggcttcattggaaaccgcaatcaaattagcg
gagcgacaagcgactgatagcgctattgggcaaaacgatctctttgctttgcctaaaaat
actcaacccactctcattgaagaaagtacgcattttattactagtgaattagaatggagt
gaaaccgaacggttaaaccgagaaagagacagcctaggtcattatttaagtggacaccca
attaaaccttatttagcggaattaactcaattaactcatcatcgcttagctgaagtgaga
cccactaatcataagcaaaccatacgaatcgctggttgggtaacagatttgcgcatcaat
actaaacgcggacgaattgcttttattagcctagatgacagtacagcacaattggaggtt
aaggtttacagcgaattgtataccaaggtagaaaatcttttagcattagcaaaagattct
ttattaatcgttgaaggtgaagttcgtacagatgactataatggcggtcaaatgatgatt
gctgagaatattttcactttagaatcagctcgagagaactatgctagccgtttagaaatt
acgattaccaccccgcaagcgaatattaccttaggaaaacaattgttagccctattgact
tcctatcgccacggtcgttgtgcagtattaatccattaccatcatgtcgaagcaaaagta
gacttggtgttaggtaaagagtggcgaatacaacctcaatgggcgttactgaagcaatta
gaagaattagtgggaaaaaatggagttaaggttatttattga
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