Thalassospira indica: DY252_02995
Help
Entry
DY252_02995 CDS
T05581
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tii
Thalassospira indica
Pathway
tii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DY252_02995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tii03019
]
DY252_02995
Enzymes [BR:
tii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DY252_02995
Messenger RNA biogenesis [BR:
tii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DY252_02995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXO13336
LinkDB
All DBs
Position
630145..631926
Genome browser
AA seq
593 aa
AA seq
DB search
MTNFNGLNLIEPLLRNVEAAGFSAPTEIQAATIPALLEGKDLMGISHTGGGKTAAFCLPL
LQRLAENPQRPKPGQPRAVILAPTRELATQIGQCLRDFKKGIRLFSSVVFGGSPMGPQIQ
ELRRGVDILVATPGRLLDHMSRNTVRFDDVEIFILDEADRMLDMGFSEDVLTVAELLPNN
HQTVMFSATMPAEVKHLTDRLLKDPVKVETAPQASVTERVTQVGMFVKRHDKTKLLVQIL
NRDDTDRVLVFTKTKADADELSFQLRDEGIDSDAIHGDKQQRIRQKILRNFRNGQFPVLI
ATDVAARGIDVPGITHVVNYDLPQDADSYVHRIGRTGRGSAEGIAISFCEPRDIRLLRNI
ERLIKQDVGIDEDHEFHAAPPPRSFGAGAGAGGRGGRGGRDGGRGFGGGGRGGFGGRDGG
RGRGGFGGGRDGARGDNRDGGRGRGFGGPRDGARAEGDRAARGFGGRDEARDGGRDGARR
DFNDRPRRDGGDFRNDRKPRFDNDDRAPRGDREERSGGRGGNFRPRGEGGNRDERRFADK
PRGDRGGNFRGRDGGKDGGRDGARRDFGDRPRRAEGGRNEGRGGNQGMKRRSA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacgaattttaatgggctcaacctgatcgagcccctgctgcgcaatgttgaagctgcc
ggtttctccgcgccgaccgaaattcaggccgcgacgattcctgctcttctcgaaggcaag
gacctgatgggtatttcccatacgggtggcggtaaaaccgctgcattctgcctgccattg
ctgcagcgtcttgccgaaaacccgcagcgcccgaaaccgggtcagccgcgtgcggttatt
ctggctccgacccgcgaactggccacccagatcggccagtgcctgcgcgatttcaaaaaa
ggcatccgcctgttttcttctgttgtctttggtggctctccgatgggcccgcaaattcag
gaactgcgccgtggcgttgatatcctggtggcgaccccgggccgtctgctggatcacatg
tcgcgcaacacggttcgtttcgacgatgtcgaaatcttcatccttgatgaagccgaccgt
atgcttgatatgggcttctccgaagacgttctgaccgtggctgaactgctgccgaacaat
catcagaccgtgatgttctcggcaaccatgccggccgaagtcaaacacctgaccgaccgt
cttctcaaagatccggtcaaggttgaaaccgcaccgcaggcaagtgttaccgaacgtgtg
acccaggttggcatgttcgtgaaacgtcacgacaagaccaagcttctggttcagattctc
aaccgtgatgacaccgaccgcgttctggtctttaccaaaaccaaggcagatgccgacgaa
ctgtcgttccagctgcgcgatgaaggcatcgacagcgatgccatccatggcgacaaacag
cagcgcatccgtcagaaaatcctgcgcaacttccgcaatggtcaattcccggttctgatc
gcaaccgatgttgcggcccgtggtatcgacgttccgggcattacccacgttgtgaactat
gatctgccgcaggatgccgacagctatgttcaccgtatcggtcgtaccggtcgtggttct
gccgaaggtattgcgatttcattctgtgagccgcgcgacattcgcttgcttcgcaacatc
gaacgcctgatcaaacaggatgtcgggatcgacgaagatcacgaattccatgcagccccg
ccgccccgttcgttcggtgccggtgctggtgcaggcggtcgtggtggtcgcggtggccgt
gacggtggtcgtggctttggcggcggcggtcgcggtggtttcggcggccgtgatggcggc
cggggccgtggcggcttcggcggtggtcgtgatggtgcccgtggtgacaatcgtgacggt
ggtcgcggtcgtggtttcggcggcccgcgtgacggtgcccgcgccgaaggtgatcgcgca
gcccgtggcttcggtggtcgtgatgaggcacgcgatggtggccgtgatggcgcacgtcgt
gacttcaatgatcgtccgcgtcgtgatggcggtgatttccgcaatgaccgcaaaccgcgc
tttgacaatgatgaccgtgcaccgcgcggcgatcgtgaagagcgcagtggcggccgcggt
ggcaacttccgcccccgtggtgaaggtggcaaccgtgacgaacgtcgctttgccgacaag
ccgcgtggtgatcgtggcggtaatttccgcggtcgtgacggtggcaaagacggtggccgt
gatggtgcccgtcgtgactttggcgaccgtccgcgtcgtgcagaaggtggtcgcaacgaa
ggtcgcggcggcaaccagggcatgaagcgccgttcggcataa
DBGET
integrated database retrieval system
